Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq546 147 1e-30 >seq546 Length=57643 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || ||||| || ||||| ||||| ||||| || | Sbjct 56223 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 56164 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| |||| | |||| || || || ||||| | || ||||||| Sbjct 56163 GGATACCATTGAGAATGTTAAGGCGAAAA-TTCAAGATAAGGAAGGAATTCCACCAGATC 56105 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | ||||||||||| || || ||| ||||||| | | | || ||| ||||| | Sbjct 56104 AGCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATA 56045 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||| ||||| || || ||||| ||||| ||| | || |||||||| Sbjct 56044 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 55995 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || ||||| || ||||| ||||| ||||| || | Sbjct 56454 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 56395 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| |||||| || || ||||| |||| || ||||| Sbjct 56394 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 56335 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||||||||| || || ||| |||| || | | | || ||| ||||| || Sbjct 56334 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 56275 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| || || ||||||||||| ||| | || |||||||| Sbjct 56274 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 56226 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || ||||| || ||||| ||||| ||||| || | Sbjct 55992 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 55933 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| |||||| || || ||||| |||| || ||||| Sbjct 55932 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 55873 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||||||||| || || ||| ||||||| | | | || ||| ||||| || Sbjct 55872 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 55813 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || ||||| ||||| ||| | || ||||||| Sbjct 55812 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 55765 Score = 120 bits (132), Expect = 2e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||||||||| | || ||||| || |||| || |||| | |||| ||| Sbjct 56657 GGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAAA 56598 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| || || ||||| |||| || ||||| || | ||||||||||| || || ||| Sbjct 56597 ATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCAA 56538 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | | | || ||| ||||| ||||| ||||| || || || ||||||||| Sbjct 56537 TTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTACTTTACATTTA 56478 Query 23818 GTTTTAAGGTTGCGAGGAGGA 23838 || ||| | || |||||||| Sbjct 56477 GTCTTACGATTAAGAGGAGGA 56457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000425891316