Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq83 113 1e-19 seq380 95.1 3e-14 >seq83 Length=79254 Score = 113 bits (124), Expect = 1e-19 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || |||||||||||||||| ||| | |||||||||||||||||||| |||||||||||| Sbjct 33533 GCACCATACACAGGTTGTGCTATGGCGGAATATTTTAGAGATAATGGGAAACATGCTTTA 33592 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || || | |||||||||||||||||| Sbjct 33593 ATAATTTTTGATGATTTAAGTAAACAA 33619 >seq380 Length=37146 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 |||||||||||||| |||| ||| ||||| |||||| | ||| ||||| || || Sbjct 27403 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 27344 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || | || ||||| |||| | ||||| ||||||| || || || |||||| Sbjct 27343 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAAT-TTTTGC 27285 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || | | ||| || || ||| | ||| || || | | || || || ||| | || Sbjct 27284 TTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 27225 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||||| || | ||||||||| Sbjct 27224 TGTTTTTACAAATATTTGCATTTT 27201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192497172985538