Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq598 232 6e-56 seq1515 147 2e-30 >seq598 Length=26426 Score = 232 bits (256), Expect = 6e-56 Identities = 583/873 (67%), Gaps = 21/873 (2%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| |||| || || || | || || ||||| || || || ||||| |||| || Sbjct 2475 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 2534 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||||| ||||| ||| ||| ||||| |||| | || |||| ||| || Sbjct 2535 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAA 2594 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| || |||||||||||||||||||| ||| | | | || || Sbjct 2595 ACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCAT 2654 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGT---ATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 |||||||| ||||| ||||| | | || | ||| | |||| || | || | Sbjct 2655 CCCAATTAAA-TCACAAGGTAGAGATTCACATATGAAAGA-TCTT--TCAACTTCAACAG 2710 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 ||||| | | |||| ||| | |||| | | ||||||| |||| | | | | | Sbjct 2711 CTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATATA 2770 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 |||||| |||||| ||| || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 2771 TTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAG 2830 Query 4603 TTAATCCGGGCA-TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 | | ||| | | || | || | ||||||| |||||| || || ||| ||| | Sbjct 2831 TAAGTCCATGTAATTTATTCTGT-TTTTTAAACCAAAAAATTGCACAAAAACTACCACTA 2889 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || | ||| ||||| || ||| ||||| | || | || || | | | Sbjct 2890 AATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTG---TA 2946 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || || ||||||||| ||||| ||||| |||||||| || || | | ||| Sbjct 2947 TCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATA 3006 Query 4782 GCGTTAAATAATTT---ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || | |||||| || || || || | |||| |||||| | || || |||| Sbjct 3007 GCATGAAATAAATTTAAACGTTCTTTATCA---TCTTTTATATAATTATCAATAAGTAAA 3063 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 || ||| |||| |||||||| ||||||| || || |||||| |||||| | ||||| Sbjct 3064 CTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCT 3123 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTC 4957 ||||| | ||||||||| | |||| ||| ||| | || ||||| ||||||||| || Sbjct 3124 TCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATC 3182 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT 5017 ||| ||||||||||| || |||||||| ||||| | | ||| | || | ||| Sbjct 3183 ACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTT 3242 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 || | | ||||| | | |||||| | ||||||| | |||||||| || ||||| Sbjct 3243 TTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTC 3302 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 |||||||| || | | ||||| ||| || || Sbjct 3303 TGCTTTTTTATAAAAATCCCAAACATCTGGGTA 3335 >seq1515 Length=1449 Score = 147 bits (162), Expect = 2e-30 Identities = 211/295 (72%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||||||| | || |||| || ||||| ||||||| ||||||||||| | ||| || || Sbjct 588 AATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTG 529 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTA 4935 ||| ||||| | ||||||| ||| ||| || || | ||||| || ||| | | Sbjct 528 AAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCA 470 Query 4936 AGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 | ||||| |||||| || ||||| ||||||||||| || || ||||| |||||| | Sbjct 469 AATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAAT 410 Query 4996 ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055 | ||| | || | ||||| ||| |||||| | | |||||| | ||||| Sbjct 409 GTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTT 350 Query 5056 CAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 || |||||||||| || ||||| |||||||| || | | ||| | |||||||| Sbjct 349 CAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038009206591