Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq546 473 2e-128 seq598 242 5e-59 seq1515 212 9e-50 >seq546 Length=57643 Score = 473 bits (524), Expect = 2e-128 Identities = 1026/1517 (68%), Gaps = 35/1517 (2%) Strand=Plus/Plus Query 77101 CTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 77160 || |||| | ||||||||| || | ||||||||| | |||||| | | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 77161 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAG 77220 |||| || || || ||||| | ||||||||||||||| || || || | |||||| |||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 77221 TTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 77280 | ||||||||||| | | ||| |||||| | |||||| || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 77281 GATATTTCCAATCCCAAAGATCTGAAGGTACAAC------ATCCCAAAGATCGTATTGTA 77334 | | |||||| |||| || | | |||| || ||| | ||| |||| | Sbjct 4724 GTTCAGTCCAATTCCAAT-ATTT--ATTATCAACCTTTATATTCCACATATCAAATTGAA 4780 Query 77335 GAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTA 77394 |||| || | ||||| || | ||| | |||||| || | ||| ||||| Sbjct 4781 GAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4840 Query 77395 GTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 77454 ||| | | ||| ||||| | ||||| || ||||| ||||| | ||||| | | Sbjct 4841 ATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATT 4900 Query 77455 CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 ||| ||||||| || | ||||| |||||| ||||| | ||| |||||||| | Sbjct 4901 CTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTT 4960 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 | || ||||| || || ||||||||||| | || || ||| ||||||| || ||||| Sbjct 4961 GTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGAT 5020 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 ||||||| | ||||||||||| | | |||||| || | |||| | || | || Sbjct 5021 AATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATA 5080 Query 77635 GTTTAAGAAAATCAAA---TCTTCCATCTATAACAA-ACATGTTCA--AAGCTATAGATG 77688 ||| ||||| ||| | || ||| || | | | || | || |||| ||||||| Sbjct 5081 ATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATG 5140 Query 77689 CTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGA 77747 ||| |||||||| || || |||| | | | || ||||| ||||| || ||||||| Sbjct 5141 CTAAGTTACAAACAGCAACTTCATCTGGTGATGT-ATATTCGATTATTTCACAACATAGA 5199 Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTA 77807 ||||||||||| || || || | ||||| ||| || || ||| ||||| || ||| Sbjct 5200 TTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTA 5259 Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867 || | ||| | || || ||||| || || || | ||||| ||| | | | Sbjct 5260 TACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATA--AAT 5317 Query 77868 CTAGCTTTTATCATAGATTTGTATCGCC---TCTCTCTTTCATATTGAGTATATAGCCGT 77924 || || | || | || ||| | || | ||| |||||||| ||||| | Sbjct 5318 CTTGCGCTAAT-ACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTT 5376 Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| || ||||| ||| || || || ||||||||||| ||||| |||| | Sbjct 5377 TCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTC 5436 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | || ||| ||||||| ||||||||| | ||| |||| ||| | |||| |||| Sbjct 5437 CAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAAT 5496 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||||| | || |||||| || || ||| ||| | | ||| |||||||| | Sbjct 5497 AAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAAT 5556 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| |||||||||||||| | ||||| ||| | ||| || ||| || || Sbjct 5557 ATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCT 5616 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGA 78223 ||||||| |||||| || || | ||| ||||||| |||||||| | |||| ||||| || Sbjct 5617 TGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGA 5675 Query 78224 TGTTCCATTTGTTC--CAGAAATATAACTTCCACTTG--CGCGAATAT-TACTAATGGAT 78278 | | |||||||||| | | |||| | || ||| | || |||| | || | | | Sbjct 5676 TATACCATTTGTTCCTCTTATATATGAATT----TTGTCCACGTATATCTTGTACT-GCT 5730 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || ||||| | ||| ||| | ||| || | || ||||| || | || Sbjct 5731 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATT 5790 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 || || || || | |||| || | |||||| ||||| || | Sbjct 5791 CCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGT 5850 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||| |||||||||||| || | |||||| ||||| |||||| || | |||| Sbjct 5851 GTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 5910 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||| | ||| ||||| || | ||| || || | | ||| | ||| | | Sbjct 5911 TATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATC 5970 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 | ||| || |||||||| | | |||||||| || ||| || ||||| |||| || Sbjct 5971 AAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAAC 6030 Query 78579 GTTTTAAAACCAAAATA 78595 ||||||||||||||||| Sbjct 6031 GTTTTAAAACCAAAATA 6047 >seq598 Length=26426 Score = 242 bits (268), Expect = 5e-59 Identities = 594/883 (67%), Gaps = 38/883 (4%) Strand=Plus/Plus Query 47831 TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTT 47890 || || |||||| || ||| ||||| ||| | |||||||| || ||||| || ||||| Sbjct 2466 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2525 Query 47891 GCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt 47950 |||| | || || ||||| ||| ||| ||||| ||||| | |||||||| Sbjct 2526 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2585 Query 47951 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 | | ||||| ||| ||| | || |||||| || ||||||||||| ||| | Sbjct 2586 ACAACCTAAACATTCC--AATAA-TCGATCTGCTACAAATTCTATATACTGAGACATTAA 2642 Query 48008 TTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCG 48065 | ||||||| || || | | | ||||||| || | || |||| |||| || Sbjct 2643 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT--TCA 2700 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTT----ACCGTTTCCTCACTTGGTGGATAC-- 48119 | ||||| || ||| | || || || ||| || | | || Sbjct 2701 ACTTCAACAGCTTCT----TTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTC 2756 Query 48120 -AACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAAT 48178 || ||| || | |||||||| |||||| ||| | ||||||||||||||||| Sbjct 2757 TAATAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAAT 2813 Query 48179 TAATTCGTTAGAAAATGTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || ||| ||| ||| || || || | | ||| || ||||||| | |||||| ||| Sbjct 2814 TAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATT 2871 Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCT 48296 || ||| ||| ||| | ||| ||||| || ||| ||| || ||| ||| Sbjct 2872 GCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCT 2931 Query 48297 CCGTAACTGGCTTCGTTG--TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACAC 48354 | || || || || | |||||| | |||||| || || ||||| || Sbjct 2932 GC--AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTG 2989 Query 48355 AAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt--ttCATTGCTATCTTTAACGTA 48412 || || |||| ||||||| ||| | || || ||| || |||||| | || Sbjct 2990 CTGGTATATTTTCAATAGCATGAAATA--AATTTAAACGTTCTTTATCATCTTTTATATA 3047 Query 48413 AGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCC 48472 | |||| || | | ||| ||| |||| || || || ||||| | ||| || |||||| Sbjct 3048 ATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGA 3107 Query 48473 GTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC-AGCCAAATTCT 48531 |||||| | | |||||||| || || || || | |||| | | | ||||||||| | Sbjct 3108 GTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTT 3166 Query 48532 CATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTT 48591 | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||| Sbjct 3167 CTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTT 3226 Query 48592 CGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 | || | | | ||| | | || || | ||| |||||| ||||| ||||||||||| Sbjct 3227 CATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTG 3286 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 ||||||||||||| |||||||||||||| | || ||| | ||| Sbjct 3287 TCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATC 3329 >seq1515 Length=1449 Score = 212 bits (234), Expect = 9e-50 Identities = 221/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||| |||| ||||| | |||||| |||| ||||| |||||||||| || Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||||| ||||| | | ||||| | || |||||||| | ||||| Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACT 475 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 ||||||||| || |||||||||||||||||| |||||||||||||| |||||||| || Sbjct 474 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 415 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 ||||| |||||| || | | | ||| | |||| || | ||| |||||| ||||| Sbjct 414 AAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTAT 355 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATA 48690 ||||||||| ||||||||||| || || ||||||||||| | |||||||| Sbjct 354 TTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649462157280