Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq546 499 4e-136 seq598 248 1e-60 seq1515 205 1e-47 >seq546 Length=57643 Score = 499 bits (552), Expect = 4e-136 Identities = 1028/1514 (68%), Gaps = 29/1514 (2%) Strand=Plus/Plus Query 75696 CTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAA 75755 || |||| | ||||||||| |||| ||||||||| | |||||||| | ||||| Sbjct 4544 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4603 Query 75756 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAG 75815 |||| || || || ||||| | ||||||||||||||| || || || | ||| || |||| Sbjct 4604 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4663 Query 75816 TCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 75875 | ||||||||||| | | ||| |||||| | |||||| || | ||||| ||||| | Sbjct 4664 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4723 Query 75876 GATATTTCCAATCCCAAAGATCTGATGGTACAAC------ATCCCAGAGATCGTATTGTA 75929 | | |||||| || || || | || | |||| || ||| | ||| |||| | Sbjct 4724 GTTCAGTCCAATTCC-AATAT-TTATTAT-CAACCTTTATATTCCACATATCAAATTGAA 4780 Query 75930 GAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTA 75989 |||| || | |||||| || | ||| | ||| || |||| | ||| ||||| Sbjct 4781 GAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4840 Query 75990 GTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT 76049 ||| | | ||||| ||| | ||||| || ||||| ||||| | ||||| | | Sbjct 4841 ATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATT 4900 Query 76050 CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 ||| |||||| || ||||||| |||||| ||||||| ||| |||| ||| | Sbjct 4901 CTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTT 4960 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 | || ||||| || || ||||||||||| | || || ||||||||||| || ||| | Sbjct 4961 GTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGAT 5020 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 ||||||| | ||||||||||| | | |||||| || | |||| | || | || Sbjct 5021 AATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATA 5080 Query 76230 GTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATAGATG 76283 ||| ||||| ||| |||| | |||| ||||| || | ||| ||||||| Sbjct 5081 ATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATG 5140 Query 76284 CTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGAT 76343 ||| |||||||| || || |||| | | ||||| ||||| || ||||||| Sbjct 5141 CTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACATAGAT 5200 Query 76344 TACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTAT 76403 ||||||| || || || || | ||||| ||| || || |||||||| || |||| Sbjct 5201 TACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTAT 5260 Query 76404 AAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 76463 | | | | | || || ||||| || || || | ||||| ||| | | || Sbjct 5261 ACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATA--AATC 5318 Query 76464 TAGCTTTTATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAACCGTT 76520 | || || || || ||| | || || ||| |||||||| | |||||| || Sbjct 5319 TTGC-GCTAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTTT 5377 Query 76521 CAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACC 76580 ||||||| || ||||| ||| ||||| ||||||||||| |||||||| |||| || Sbjct 5378 CAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCC 5437 Query 76581 ACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 76640 | | || ||| ||||| | ||||||||| | ||| |||| ||| | |||| ||||| Sbjct 5438 AATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATA 5497 Query 76641 GATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAA 76700 ||||| | || |||||| || || ||| ||| | | |||||| ||||| | | Sbjct 5498 AATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATA 5557 Query 76701 TATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCT 76760 |||| |||||||||||||| | ||||| || | || || ||| || || | Sbjct 5558 TATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTT 5617 Query 76761 GATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTAGAT 76819 |||||| |||||| || || | ||| ||||||| |||||||| | |||| ||||| ||| Sbjct 5618 GATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGAT 5676 Query 76820 GTACCATTTGTTC--CAGAAATATAACTTCCACATGCACGAATAT-TACTAATAGATAGG 76876 |||||||||||| | | |||| | || | |||| |||| | || | | || Sbjct 5677 ATACCATTTGTTCCTCTTATATATGAATT--TTGTCCACGTATATCTTGTACT-GCTACA 5733 Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || || || ||||| ||||| || | |||||| | || ||||| ||| | || || Sbjct 5734 CCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCT 5793 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 || || ||| | |||| || | |||||| ||||| || | || Sbjct 5794 TCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTC 5853 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 |||| |||||| ||||| || | |||||| || || |||||| || | |||| ||| Sbjct 5854 CCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATAT 5913 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||| | || ||||| ||| | ||| || || | | || | ||| | || | Sbjct 5914 GTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAA 5973 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || || |||| ||||| | | |||||||| || ||| || ||||| |||| || ||| Sbjct 5974 TGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTT 6033 Query 77177 TTAAAACCAAAATA 77190 |||||||||||||| Sbjct 6034 TTAAAACCAAAATA 6047 >seq598 Length=26426 Score = 248 bits (274), Expect = 1e-60 Identities = 594/880 (68%), Gaps = 44/880 (5%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||| || || ||| | |||||||| || ||||| || ||||| |||| Sbjct 2472 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2531 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 | || || ||||| ||| ||| ||||| | ||| | |||||||| | | || Sbjct 2532 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2591 Query 46446 TAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 ||| ||| ||| | || |||||| || |||||||||||| ||| | | | Sbjct 2592 TAAACATTCC--AATAA-TCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGA 2648 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCAATAGTG 46560 |||||| || || | | ||||||| || | || |||| |||| |||| Sbjct 2649 ATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT--TCAACTTCA 2706 Query 46561 ACAGCATCCGATATTATCGATGTT----ACTGTTTCCTCACTTGGTGGATGCAT---CAA 46613 ||||| || ||| | || || || ||| || |||| || || | | Sbjct 2707 ACAGCTTCT----TTAACAATATTTTTAACAACTTCTTC---TGGTA-ATTTATTTTCTA 2758 Query 46614 ATGTT-TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATT 46672 || || | |||||||| |||||| ||| | ||||||||||||||||||| || Sbjct 2759 ATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTT 2818 Query 46673 CGTTAGAAAATGTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGC 46730 | ||| ||| || || ||| | | ||| || | ||||| | |||||| || || Sbjct 2819 CATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTGCACA 2876 Query 46731 GAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA 46790 ||| ||| ||| | ||| ||||| ||| || ||| |||| ||| ||| | | Sbjct 2877 AAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA 2936 Query 46791 ---ACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 | | | |||||| ||||| || ||||||| || || ||||| || || Sbjct 2937 TGAATTTGTATCATTT---ATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2993 Query 46848 CATTGTTTCTATAGCATTAAAGAGA---AAGtttttttCATCACTATCTTTAACATATGT 46904 || |||| ||||||| ||| | | || || || |||| ||||| | ||| | Sbjct 2994 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCA---TCTTTTATATAATT 3050 Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964 ||| || | | ||| ||| |||||||||| |||||||| | || || |||||| ||| Sbjct 3051 ATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTA 3110 Query 46965 AAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC-AGACAAATTCTCAT 47023 ||| | | ||||| ||||| || || ||| | |||| | | | || |||||| || Sbjct 3111 AAATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTA 3169 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 ||||| ||||||||||| ||||||||||| || |||||||||||||||| |||||||| Sbjct 3170 ATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCAT 3229 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | | | ||| | | || || | ||| |||||| ||||| |||||||||||||| Sbjct 3230 TTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCC 3289 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 | ||||| || |||||||||||||| | || ||| | ||| Sbjct 3290 AAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATC 3329 >seq1515 Length=1449 Score = 205 bits (226), Expect = 1e-47 Identities = 226/301 (75%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| ||| |||| ||||| | |||||| |||| || || || ||||||| ||| Sbjct 594 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 535 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||| ||||| | | |||||| | || ||||||||| | ||||| Sbjct 534 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACT 475 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 || |||||| || ||||||||||||||||| ||||||||||| || |||||||| || Sbjct 474 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 415 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 ||||| |||||||| | | | ||| | |||| || | ||| |||||| ||||| Sbjct 414 AAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTAT 355 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||||||||| ||||| ||||| || || ||||||||||| | |||||||| ||| |||| Sbjct 354 TTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 295 Query 47190 T 47190 | Sbjct 294 T 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712914553688640