Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq546 96.9 8e-15 >seq546 Length=57643 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTC 151964 |||||| ||||| |||||||| ||||| | ||| ||||| |||||||| | ||||| Sbjct 55794 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTT-- 55851 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || || | || ||||| || | | ||||||||||| ||||||||||| Sbjct 55852 CCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCC 55911 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | | || || || || || || || || || || || || | Sbjct 55912 TTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAG 55971 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || ||||| || | ||||||| Sbjct 55972 GTTTTCACAAATATCTGCATT 55992 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | |||||| ||||| |||||||| ||||| | ||| ||||| ||||| || Sbjct 56244 GACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTC 56303 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 | ||||| || || || || | || ||||| || | | ||||||||||| ||| Sbjct 56304 CAATTGCTTT--CCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 56361 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | | | || || || || || || || || || Sbjct 56362 TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTC 56421 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | || ||||| || | ||||||| Sbjct 56422 TTTCCTGTCAAGGTTTTCACAAATATCTGCATT 56454 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTC 151964 |||||| ||||| || ||||| ||||| | ||| ||||| |||||||| | ||||| Sbjct 56025 AGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTT-- 56082 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || || | || ||||| || | | ||||||||||| ||||||||||| Sbjct 56083 CCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCC 56142 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | | || || || || || || || || || || || || | Sbjct 56143 TTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAG 56202 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || ||||| || | ||||||| Sbjct 56203 GTTTTCACAAATATCTGCATT 56223 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | |||||| || ||||||||||| ||||| ||| ||||| |||||||| Sbjct 56475 GACTAAATGTAAAGTAGATTCCTTTTGGATGTTATAATCTAATAATGTTCTTCCATCTTC 56534 Query 151955 TA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 | ||||| || || || || | || ||||| || | | ||||||||||| ||| Sbjct 56535 CAATTGCTTT--CCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 56592 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | | | || || ||| || || | || || ||| Sbjct 56593 TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACATCCAAGGTGATCGTT 56652 Query 152073 TTGCC 152077 || || Sbjct 56653 TTTCC 56657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153787877526317