Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq546 118 2e-21 >seq546 Length=57643 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || |||||| |||||||| || || | | || | |||||||| | ||| Sbjct 56250 ATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTG 56309 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || ||||| || || | ||| || || || || || ||||| ||||| || || Sbjct 56310 CTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTT 56369 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| | || || || ||||| | ||| || ||||| ||||| ||||| || || Sbjct 56370 CGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTCTTTCCTGT 56429 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 ||| || || || |||||||||||| Sbjct 56430 CAAGGTTTTCACAAATATCTGCATT 56454 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || |||||| |||||||| || || | | || | ||||| || | ||| Sbjct 55789 TGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGC 55848 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || || | ||| || || || || || ||||| ||||| || || Sbjct 55849 TTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTC 55908 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || || || ||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 55909 GCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTC 55968 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||||||| Sbjct 55969 AAGGTTTTCACAAATATCTGCATT 55992 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || |||||| || ||||| || || | | || | ||||| || | ||| Sbjct 56020 TGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGC 56079 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || || | ||| || || ||||| || ||||| ||||| || || Sbjct 56080 TTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTC 56139 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || ||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 56140 GCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTC 56199 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||||||| Sbjct 56200 AAGGTTTTCACAAATATCTGCATT 56223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046709332932458