Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq598 241 1e-58 seq1515 161 1e-34 seq1950 127 2e-24 >seq598 Length=26426 Score = 241 bits (266), Expect = 1e-58 Identities = 563/837 (67%), Gaps = 27/837 (3%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||| ||||| || |||||||| |||| ||||| ||||| || || | Sbjct 2472 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2531 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 || || || ||||| ||| ||| ||||| | || | | | | ||| Sbjct 2532 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2591 Query 23325 TAA---TTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT- 23380 ||| |||| ||| | ||||||||||||||| ||||| ||| |||| || || | Sbjct 2592 TAAACATTCCAATAATCG---ATCTGCTACAAATTCTATATACTGAGACATTAA-TCTTG 2647 Query 23381 AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAA 23440 | || || || |||| | || | | ||| ||| ||| | |||||| || Sbjct 2648 AATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAA 2707 Query 23441 CAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA 23500 |||| ||||||| || | || ||||||||| | || || ||| | || Sbjct 2708 CAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTAT 2767 Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 | | |||||| |||||| ||||| |||||||| |||||||| | ||||||| || Sbjct 2768 ATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAA 2827 Query 23561 ATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 | || | ||| || ||| || || ||||||||| |||||| |||||| ||| || Sbjct 2828 AAGTAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCA 2886 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||| | ||||| |||||| ||| || |||| | | |||||| ||| Sbjct 2887 CTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGA---ATTT 2943 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATTGTTTC 23738 |||| ||||||||| | |||| || || | | ||| || || |||| Sbjct 2944 GTATCATTTATCCATTTTGCAGCCCAAAGTGCTTT-ATTCTTAACTGCTGGTATATTTTC 3002 Query 23739 AATTGCTTTTAAGAGAAAAGTTTT----TTCTTCATTATCTGTTATATATGTATCAATTA 23794 ||| || | || | || ||| ||||| || |||| ||||||| ||||||| | Sbjct 3003 AATAGCAT----GAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAA 3058 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 ||||||| ||| |||| ||||| || ||||| | || || ||||| ||||| | Sbjct 3059 GTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTT 3118 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 ||||||| | | |||||| || | ||||| | |||| |||||||| || |||| Sbjct 3119 TAGCTTCTGTAATTTGAACTTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATAC 3178 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGA-- 23972 |||||||||| ||||| || || | ||||| ||| ||||||||| |||||| || | Sbjct 3179 CATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCAT--TTTCATT 3236 Query 23973 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||| |||| || | ||| |||||||||| | ||| ||| |||||||||| Sbjct 3237 TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 3293 >seq1515 Length=1449 Score = 161 bits (178), Expect = 1e-34 Identities = 189/254 (74%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 ||||| ||||||||| ||||||||| ||||||| || |||||||||| ||| || ||| Sbjct 587 ATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGA 528 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 || |||||| | |||||||| | ||| || || | |||||| | |||| ||| Sbjct 527 AAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAA 468 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 ||||| || || ||||||||||| ||||| || || | |||| ||||||||||||| Sbjct 467 TTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGT 408 Query 23959 CTTTCAT---CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 24015 |||||| || | |||||||| | || || | ||| |||||||||| | ||| Sbjct 407 TTTTCATTTACATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCT 351 Query 24016 TCAACTGTCCAAAA 24029 ||| | |||||||| Sbjct 350 TCAGCAGTCCAAAA 337 >seq1950 Length=1218 Score = 127 bits (140), Expect = 2e-24 Identities = 97/114 (85%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 8509 GTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGT-----GATCCACCT 8563 |||||||| |||| | |||| |||||| || |||||||||| ||| | ||||||| Sbjct 1218 GTTTCACCTTGTTAGTCAGGATGGTCTTGATCTCCTGACCT--TGTTCCTCGTTCCACCT 1161 Query 8564 GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 |||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1160 ACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCC 1107 Score = 116 bits (128), Expect = 4e-21 Identities = 106/131 (81%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 8479 GCTAATTTTTGTATTTTTAGTAGAGAGAGGG-TTTCACCATGTTGGCCAGGCTGGTCTCG 8537 ||||||||| | |||| ||| || |||| ||||||||||||| ||||||| |||| | Sbjct 9 GCTAATTTTCACAGTTTTTATAG-GACAGGGGTTTCACCATGTTGCCCAGGCTAGTCTTG 67 Query 8538 AACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCA 8597 |||||||| |||| | |||| ||| ||| ||||||||||||||||||||||||||| Sbjct 68 AACTCCTGGGCTCAAGGGATCTACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTT 127 Query 8598 TGAGCCACCGC 8608 | || ||| || Sbjct 128 TAAGTCACTGC 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521473483077800