Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq546 129 1e-24 >seq546 Length=57643 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||| || ||||||||||| || ||| || || Sbjct 55988 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 55929 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||| || || |||||||| || || || |||||| Sbjct 55928 ACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAGCAA 55869 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||||||| || | | ||||||||| || Sbjct 55868 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATC 55809 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 55808 CAGAAAGAATCTAC 55795 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||| || ||||||||||| || ||| || || Sbjct 56219 CAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCGGAT 56160 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||| || || |||||||| || || || |||||| Sbjct 56159 ACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAGCAA 56100 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||||||| || | | ||||||||| | Sbjct 56099 AGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAACATA 56040 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 56039 CAGAAAGAATCTAC 56026 Score = 105 bits (116), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 |||||||||||||||| | || || || || || ||||| ||||| || || || Sbjct 56658 AGGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAA 56599 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||||| || || |||||||| || || || |||||| || | || || || ||||| || Sbjct 56598 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 56539 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 | ||||||||||| || | ||||||||| ||||||| ||||| || Sbjct 56538 ATTGGAAGATGGAAGAACATTATTAGATTATAACATCCAAAAGGAATCTAC 56488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203696853411038