Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq139 123 3e-23 >seq139 Length=234430 Score = 123 bits (136), Expect = 3e-23 Identities = 559/866 (65%), Gaps = 19/866 (2%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 |||||| | | || ||||| ||| |||||||| |||||||| ||||| || | ||| Sbjct 200110 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 200051 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAG 16782 ||| || ||||| ||| ||||||||| | || |||| ||||| || | || | Sbjct 200050 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAA 199991 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 | | ||||| ||| ||||||||||| ||||| || |||||||| | ||||| Sbjct 199990 ACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCAT 199931 Query 16843 TCCTA-TAAGACGTACCGGAAGAGCTTC-CGT-CAAAAATCGTTGCTCTATAACAACCGC 16899 || | |||| | | || |||| ||| | | ||| | || || | |||| || Sbjct 199930 CCCAATTAAGTCACA-AGGTAGAGATTCACATATGAAAGACCTT--TCAACTTCAACAGC 199874 Query 16900 TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTT-TAAGATGTTTAAACA 16958 ||| || | |||| | ||| ||| || | || ||| || ||| | || | | Sbjct 199873 TTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATA-AACTATATA 199815 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 | ||||| ||||| ||||||||| || ||||| || || ||||| || ||| | Sbjct 199814 TTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGG 199755 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || | | || | |||| || |||||||| || || ||| ||| || Sbjct 199754 TAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAA 199695 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 | | |||||| || || ||||| || | | || ||| || | | | | | | Sbjct 199694 ACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAATTTGTAT 199638 Query 17139 TACGAATCCATTTCTGC-ACCCACTCGGCTTTTTGCTTTA-TGCAATCCATCGTTTCTAT 17196 | |||||||| ||| |||| ||||| | ||| | ||| || |||| || Sbjct 199637 CATTTATCCATTT-TGCTGCCCAAAGTGCTTTATTCTTAACTGC-TGGTATATTTTCAAT 199580 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 || | |||||| || ||| | | || ||||||| | || || |||| || Sbjct 199579 AGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAAGTAAACT 199520 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 || |||| || ||||| || |||| ||||| |||||| |||||| | ||||| Sbjct 199519 ATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTC 199460 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTC-CGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | |||||||| | | | || || | | || | |||||| || || || || | Sbjct 199459 TGTAATTTGAACCT-CTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATACCATCAC 199401 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC-GTCCGGTGTAAGAACG 17434 | || || ||||| || |||| ||| ||||| |||| ||||| || | ||| Sbjct 199400 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAATTTTT 199341 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 | | || |||||||| | |||| ||| | |||||| | |||||||| || || Sbjct 199340 C-AAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCT 199282 Query 17495 GCCTTTTTATACATATTCCAAATATC 17520 || |||||||| | || ||||| ||| Sbjct 199281 GCTTTTTTATAAAAATCCCAAACATC 199256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533217721520