Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq37 165 6e-36 >seq37 Length=214198 Score = 165 bits (182), Expect = 6e-36 Identities = 345/511 (68%), Gaps = 5/511 (1%) Strand=Plus/Minus Query 101645 GGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAG 101704 ||||| ||| |||| ||| | | ||| ||||| ||| ||| ||||||| ||| Sbjct 55247 GGAAAGGGTA-AGGAATTCTGTTTAGCTGAATTTTCAGACTATCTATGTGATTGTTATAT 55189 Query 101705 ATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCA 101764 ||||| |||| ||||| | || || || ||| |||| || ||| || |||||| Sbjct 55188 ATGTGGGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAAGTTACATACTTGAGCA 55129 Query 101765 ATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA 101824 | |||| | || |||| || ||| ||||| || || || || || | || | |||| Sbjct 55128 AGCATGTAGGTGAAAATTGAGTAGGAGGCAATATTGAAGGGAACACCAAGACCTAAATCA 55069 Query 101825 GCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAAT 101884 |||| |||||||| ||| || | || ||||| | | ||||||||| | ||| Sbjct 55068 CAAGATCGTTGATACATGATACATGATAATTTCCCATCGAAAATATAAAATTGGCATAAA 55009 Query 101885 ACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944 | ||||||||| || || |||||||| | || |||||||| ||||||| | Sbjct 55008 ATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATTCCATGCACACAAAATA 54949 Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004 || |||||| ||| || | ||||||| || || | | ||||| || |||| | Sbjct 54948 ATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTTATAATATTTTTTAGCTGATCAATT 54889 Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTT--ATATTCTGCTCCGAAATGCCTCCACT 102062 |||| || ||||| | ||| ||| |||||| ||||| ||||| ||||| | Sbjct 54888 CCTTTATTTTCATAATTAT--CATACATATTTGTATATTCAGCTCCAAAATGTCTCCATT 54831 Query 102063 GAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTA 102122 |||| ||||| | ||| || | ||| | | ||||| ||| | | ||||||| Sbjct 54830 GAAAACCATAAATAGGACCTAAATCATTTACCTCTCTATCAAATAGTTTTCTATTATCTA 54771 Query 102123 AAAATGATCTAGATCCATTCGCATCCCAAAT 102153 ||||| ||||| |||||| || ||||| || Sbjct 54770 AAAATTCTCTAGTTCCATTTGCTTCCCATAT 54740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242773138414