Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq37 165 6e-36 >seq37 Length=214198 Score = 165 bits (182), Expect = 6e-36 Identities = 461/702 (66%), Gaps = 14/702 (2%) Strand=Plus/Minus Query 97000 TTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGA 97059 || || || |||||||| ||| ||| | ||||| | | ||| ||| |||||| Sbjct 55257 TTAAGCGTGGGGAAAGGGTAAGGAATTCTGTTTAGCTGAATTTTCAGACTATCTATGTGA 55198 Query 97060 TTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTG 97119 || ||| ||||| |||| ||||||| ||| || |||||| |||| ||| | | Sbjct 55197 TTGTTATATATGTGGGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAAGTTACAT 55138 Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 || || || | ||| | || || | || ||| ||||| || || || || || || Sbjct 55137 ACTTGAGCAAGCATGTAGGTGAAAATTGAGTAGGAGGCAATATTGAAGGGAACACCAAGA 55078 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 || | |||| |||| |||||| | ||| || | || ||||| | | |||||| Sbjct 55077 CCTAAATCACAAGATCGTTGATACATGATACATGATAATTTCCCATCGAAAATATAAAAT 55018 Query 97240 TGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCA 97299 || | || | |||||| || || || |||||||| | ||| |||||||| ||| Sbjct 55017 TGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATTCCATGCA 54958 Query 97300 CACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAAT 97359 |||| | ||||||||| ||||| | | | ||| ||| || || | |||| Sbjct 54957 CACAAAATAATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTTATAATATTTTTTAGC 54898 Query 97360 TGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGC 97419 ||||||| |||| ||||||| | | | | | |||||| ||||||||||| Sbjct 54897 TGATCAATTCCTTTATTTTCATAATTATCATACATATTTGTATATTCAGCTCCAAAATGT 54838 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGC 97479 |||||||| || ||||||| ||| || | || | | ||||||||| | | Sbjct 54837 CTCCATTGAAAACCATAAATAGGACCTAAATCATTTACCTCTCTATCAAATAGTTTTCTA 54778 Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAG 97538 ||||||||| | |||| ||||||||| ||||| || |||| || ||| Sbjct 54777 TTATCTAAAAATTCTCTAGTTCCATTTGCTTCCCATATTCTCACATTTTTATTTAACAAA 54718 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 | ||| | | || ||||| |||||||| | ||||| || | || ||||| Sbjct 54717 ATATTT-CCATTGGTTTCCCCTCTTATAAACCAAAGTAATTCCTCAATAATTCCTCTTAC 54659 Query 97599 AAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCAT 97658 ||| | | |||| |||||||| || |||||| | ||| |||| || || ||| ||| Sbjct 54658 AAACAATTTCTTGGTTGTTAATAGGGGAAAA---TATTC--AGCTAAAT-TATACTTCAT 54605 Query 97659 ------TCCAAAAACACTCAATGTTCCAACTCCTGTTCTGTC 97694 |||||| ||| ||| |||||||||||||| || Sbjct 54604 CATATATCCAAATTTACTTAATACACCAACTCCTGTTCTATC 54563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775910612980