Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq37 219 6e-52 seq213 163 4e-35 seq100 125 1e-23 >seq37 Length=214198 Score = 219 bits (242), Expect = 6e-52 Identities = 474/704 (67%), Gaps = 9/704 (1%) Strand=Plus/Minus Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 || ||||| |||||| || ||||| || | | || || ||||| |||| ||| Sbjct 55203 ATGTGATTGTTATATATGTGGGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAAG 55144 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| || || |||| ||| || || || | || |||| ||| || || ||| Sbjct 55143 TTACATACTTGAGCAAGCATGTAGGTGAAAATTGAGTAGGAGGCAATATTGAAGGGAACA 55084 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 || | ||| | |||| |||| ||||||||| ||||| | |||| || | Sbjct 55083 CCAAGACCTAAATCACAAGATCGTTGATACATGATACATGATA---ATTTCCCATCGAAA 55027 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 | || |||||| ||| |||||||||||||| |||| || || | ||| | | Sbjct 55026 ATATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACA 54967 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || || || || ||||| | |||| ||||||||| |||||||||| Sbjct 54966 TTCCATGCACACAAAATAATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTTATAATA 54907 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | ||| ||||||| ||||| |||| |||||| || ||||| |||||| ||| Sbjct 54906 TTTTTTAGCTGATCAATTCCTTTATTTTCATAATTATCATACATATTTGTATATTCAGCT 54847 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800 |||||||| | ||||||||||||||||| |||||||||||| | | | ||||||| Sbjct 54846 CCAAAATGTCTCCATTGAAAACCATAAATAGGACCTAAATCATTTACCTCTCTATCAAAT 54787 Query 205801 AAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttta 205860 | | || | || | ||| | | ||||||| | ||||| || | |||| Sbjct 54786 AGTTTTCTATTATCTAAAAATTCTCTAGTTCCATTTGCTTCCCATATTCTCACATTTTTA 54727 Query 205861 ttttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATT 205920 ||| | ||||||| ||| ||| || ||||||||| | |||||| |||| |||| Sbjct 54726 TTTAACAAAATATTTCCATTGGTTTCCCCTCTTATAAACCAAAGTAATTCCTCAATAATT 54667 Query 205921 CCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATATTTC 205980 ||||| ||||| | || ||||| |||| ||||| | ||| |||| ||||| ||| Sbjct 54666 CCTCTTACAAACAATTTCTTGGTTGTTAATAGGGGAAAATATTCAGCTAAATTATACTTC 54607 Query 205981 ATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTC 206038 || | | ||| || | || | | | || |||||||||| | || |||| ||| Sbjct 54606 ATCATATATCCAAATTTACTTAATACACCAACTCCTGTTCTATCATCCTGTTTAT--TTC 54549 Query 206039 CATTAGATAAT-ATTTCTGATATACCTTTTAAATATTGATATTC 206081 |||| || || | || ||||| ||||||||||| || || Sbjct 54548 CATT-CATCATAACATCGTATATAATATTTAAATATTGGTACTC 54506 >seq213 Length=18882 Score = 163 bits (180), Expect = 4e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| | || || | ||||| || || || || |||| | ||| || Sbjct 581 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 522 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| ||||||||||||||| ||||| || ||||| ||||| Sbjct 521 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 462 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || || ||||||||||||||||||||| | |||||||| |||||||| Sbjct 461 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 402 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || |||||||| ||||| || || || ||||| ||| |||| ||| || || Sbjct 401 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAA 347 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | || || || || || || | || | ||| || Sbjct 1043 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 984 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| |||| ||||||||||||||| ||||| || ||||| ||||| Sbjct 983 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 924 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || |||||||||||||||||||||||| | |||||||| |||||||| Sbjct 923 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 864 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || |||||||| ||||| || || || ||||| ||| |||| ||| Sbjct 863 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 815 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| | || || ||||||| || || || || | || |||| | Sbjct 812 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 753 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| ||||||||||||||| ||||| || ||||| ||||| Sbjct 752 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 693 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||||||||||||||| || ||| | |||||||| |||||||| Sbjct 692 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAA 633 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || ||||| || || |||| || || ||||| ||| |||| || Sbjct 632 CATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGG 585 Score = 140 bits (154), Expect = 5e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAA 124624 ||| ||||| || || | || |||| || ||||| ||| ||| |||| ||| Sbjct 1247 AGGTAAAACGATCACCTTGGATGTTGAGTCATCGGATACGATTGAGAATGTAAAGGCGAA 1188 Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 |||||| ||||| ||||| |||||||||||||| ||||| | || ||||| ||||| || Sbjct 1187 AATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCA 1128 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 ||| || ||| | |||||||| |||||||| || ||||| ||||| || || ||||| Sbjct 1127 ATTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTT 1068 Query 124745 GGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||| |||| ||| Sbjct 1067 AGTCTTACGATTAAGAGGAGGT 1046 >seq100 Length=495214 Score = 125 bits (138), Expect = 1e-23 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| |||| ||| ||| || ||||| || | | ||| ||||| || Sbjct 295098 AATGCAAATATTCGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGT 295157 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| ||| ||||| || |||||||| ||||| |||| || || | || Sbjct 295158 AGATACAATTGAAAATATTAAAGCA-AAAATTCAGGATAAGGAAGTAATTCCCCTCGACG 295216 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | |||||||| |||||||||||||| | | ||| ||| | ||||| | Sbjct 295217 AACAAAGATTAATTTTTGCGGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTACA 295276 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||| || |||||||| ||| || | ||||| Sbjct 295277 ATATCCAGAAAGAATCCACTCTGAACTTGGT 295307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755437925715200