Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq213 87.8 2e-12 >seq213 Length=18882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GC 118569 |||||| | ||||| || || ||||| | ||||| ||||| || ||||| ||||| | Sbjct 353 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 412 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || | |||||| | |||||||| ||| | || | | ||||||||||| | Sbjct 413 TAAT-GTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTG 471 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| ||| |||||| || || | || | || |||| || | || Sbjct 472 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGAT-TCT 530 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748 || || | ||| | || || || |||| ||||| || || |||||||| || | || Sbjct 531 ACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATTCCTCCTCCT 590 Query 118749 ATTACTCGT 118757 ||| |||| Sbjct 591 CTTAATCGT 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820280092488