Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq139 251 7e-62 >seq139 Length=234430 Score = 251 bits (278), Expect = 7e-62 Identities = 595/884 (67%), Gaps = 21/884 (2%) Strand=Plus/Minus Query 15902 AGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACT 15961 ||| |||| || | ||| ||| | | | |||||| ||| ||||| ||| ||| Sbjct 200142 AGACAAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACA 200083 Query 15962 CTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGA 16021 | |||||||| || ||||||||||||| || ||||| ||||| ||| ||||||| Sbjct 200082 CGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGA 200023 Query 16022 TTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAACAATAATCTATCCGCCACA 16078 ||||||| | || | ||| || || || ||| || ||||| ||| || ||| Sbjct 200022 TTTTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAA---TAATCGATCTGCTACA 199966 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 ||||| |||||||| |||||| | ||||| || ||||| | | ||| | | | Sbjct 199965 AATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGAT 199906 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTA 16198 || || ||| |||| | | ||| ||||| | | |||| | | || || | Sbjct 199905 TCACATATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAATATTTTTAACAAC--TT 199848 Query 16199 TTTAACGGAGGGT--TTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 || | || | || ||| || | |||| ||| |||||| ||| |||| Sbjct 199847 CTTCTGGTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAAATCTGTATGTAATC 199788 Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC-TGGCATTAGTCCTCGTTTT 16315 |||| || ||||| |||| || || ||| ||||| || || ||| || | ||||| Sbjct 199787 CTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTTT-GTTTT 199729 Query 16316 TTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAAT 16375 |||| |||||| ||||| || |||| ||| | |||||||||||| ||| | Sbjct 199728 TTAAACCAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTCAACACATGCATTT 199669 Query 16376 GCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaattt 16435 || || | || || | | | |||| || | |||||||||| |||||| | Sbjct 199668 GCTACAATTCTTTCTGCAAATGA---ATTTGTATCATTTATCCATTTTGCTGCCCAAAGT 199612 Query 16436 gctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTT 16494 ||||| | ||||| | | | || || || || |||| |||||||| |||||| Sbjct 199611 GCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTT 199553 Query 16495 GCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCAT 16554 |||| |||||| | ||||| ||||||||||| |||||||||| ||||| |||| Sbjct 199552 TTCATCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTGAATGTATATTTTCCAC 199493 Query 16555 TGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCT 16614 |||||| ||||| ||||| | ||||||| | ||||| || || ||||| | Sbjct 199492 TGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTC-TCTTAAAAATT 199434 Query 16615 TTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTT 16673 | || || || ||||| ||||| ||||| |||||||||||||| || | || |||| Sbjct 199433 TACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTT 199374 Query 16674 TAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAA 16732 ||||||||| ||||| || || | || |||| | | || ||||| |||||||| Sbjct 199373 TAATAAAATGCTTTTCATTCTCATTTAATTTTTCA-AAATCTTTTAAATCACTTGATAAA 199315 Query 16733 TCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || | ||||| | |||||||| || || | || |||||||| Sbjct 199314 TCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 199271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500934400400