Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq139 237 2e-57 >seq139 Length=234430 Score = 237 bits (262), Expect = 2e-57 Identities = 592/884 (67%), Gaps = 29/884 (3%) Strand=Plus/Minus Query 13875 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13934 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 200138 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 200079 Query 13935 TTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTG 13994 ||||||| ||||| ||||| |||| || || || ||||| ||| ||| |||||| Sbjct 200078 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 200019 Query 13995 TTGACATAAACACTTTATCACAACCTAG---TTCTAATAGTAATCTATCCGCAATGAACT 14051 ||| | ||| | ||| |||||||| |||||||| ||| ||| || | || | Sbjct 200018 TTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAATA---ATCGATCTGCTACAAATT 199962 Query 14052 CAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGG 14111 ||||||| ||||||||||| ||||||| || |||| | ||| | | ||| Sbjct 199961 CAATATACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAAGGTAG-AGATTCA 199903 Query 14112 T-TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTA 14170 || || |||| | ||||| || |||| |||| | ||| || ||| | Sbjct 199902 CATATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCT 199843 Query 14171 GAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | || |||||| | || | |||| ||| |||||| ||| | || | Sbjct 199842 G--GTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAAATCTGTATGTAATCCTT 199785 Query 14229 CATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGttttttt 14287 ||||||||||||| ||||| || ||| || | ||| || || | | ||||||| Sbjct 199784 CATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTA 199726 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 |||||||| || ||| ||| || ||| | ||| || ||||| ||| ||| Sbjct 199725 AACCAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTCAACACATGCATTTGCT 199666 Query 14348 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAt 14407 | | || |||| |||| || | | | || |||||||||| ||||| | | Sbjct 199665 ACAATTCTTTCTGCAAATGAATTTGTATCATT---TATCCATTTTGCTGCCCAAAGTGCT 199609 Query 14408 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT--CCTTCTCTTTAG 14465 || || |||| || |||||||||||| |||||||| | | |||| ||| Sbjct 199608 TTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCA 199549 Query 14466 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14525 | || | || ||| | |||||||| ||||| |||| || ||||| ||||||| | Sbjct 199548 TCTTTTATATAATTGTCT--ATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTG 199491 Query 14526 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTT 14585 |||| ||||| ||||| | ||||||||| ||| |||||| ||||| | Sbjct 199490 CTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTAC 199431 Query 14586 CGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14645 |||||||||||| ||||||||||||||||||||||||||||| |||| | ||||| Sbjct 199430 TGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 199371 Query 14646 TAAAGTATTGCTCTTCATTGCTGAGT---TTTTTC-CAATCGGCTAAATCCTTAGAAAGA 14701 ||| | |||| |||||| || | | |||||| |||| |||||| | || | | Sbjct 199370 TAA---AATGCTTTTCATT-CTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAA 199315 Query 14702 TCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 |||| ||| ||| |||||||||| || | ||||||||||| Sbjct 199314 TCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 199271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482334059881520