Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq139 100 3e-16 seq213 86.0 6e-12 >seq139 Length=234430 Score = 100 bits (110), Expect = 3e-16 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||| ||| || ||| |||||| || ||||| | | || ||||| ||||| Sbjct 199225 TAGATTTACATTGTACCCAATTTTATATCCCGATGTTTGGGATTTTTATAAAAAAGCAGA 199284 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| |||||||| | |||||| |||| | || | ||| | | |||| || Sbjct 199285 AGCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAA 199344 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 | || || ||| | ||||||||||||| || || || ||||| || || || Sbjct 199345 ATTAAATGAGAATGAAAAGCATTTTATTAAACATGTATTAGCATTTTTTGCAGCTAGTGA 199404 Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775 |||||| || || ||||||| | | ||||| | ||| || ||| | || || || Sbjct 199405 TGGTATAGTATTAGAAAATTTGGCCAGTAAATTTTTAAGAGAGGTTCAAATTACAGAAGC 199464 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | | |||||| ||||||| | || | ||||| | |||||||||| Sbjct 199465 TAAAAAATTTTACTCATTTCAAATAGCAGTGGAAAATATACATTCAGAAA 199514 >seq213 Length=18882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||||| || || |||||| | || || ||| | || Sbjct 580 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 521 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || || ||| || |||||||| | || ||||| ||| Sbjct 520 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 461 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG-ATTATAA 31371 || | |||||||||| || ||||| || || || | | || || | || ||||||| Sbjct 460 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGA-TGGAAGAACATTATCGGATTATAA 402 Query 31372 CATTCAAAAAGAATCGACT 31390 ||| || |||||||| ||| Sbjct 401 CATCCAGAAAGAATCTACT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755735038880