Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq112 394 1e-104 seq139 187 3e-42 >seq112 Length=225903 Score = 394 bits (436), Expect = 1e-104 Identities = 1013/1533 (66%), Gaps = 29/1533 (2%) Strand=Plus/Minus Query 62365 CTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAA 62424 || |||| | ||| || || || || |||||||||| | |||||| | ||||| Sbjct 222096 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAAA 222037 Query 62425 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62484 |||| || || || ||||| | || ||||| ||||| || ||||| | ||| ||||||| Sbjct 222036 TATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAG 221977 Query 62485 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62544 | ||||||||||| | | ||| ||| || || || | | || | ||||| ||||| | Sbjct 221976 TAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTAA 221917 Query 62545 GATGTTCCCAATTCCAAAGATCCGACGGTA-CAACANNNNNNNNNNN-ATAT-----TGT 62597 | | | ||||||||| | | || |||| |||| || Sbjct 221916 GTTCATTCCAATTCCAGTATTT----GTTATCAACTTTGATATTCCACATATCAAACTGA 221861 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGC 62656 |||||||| | || || | || | ||| |||| | |||||| || | | | ||| Sbjct 221860 AGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAGC 221802 Query 62657 TAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAG 62716 || || | | ||||||||| | || || || |||||||| || | ||||||| Sbjct 221801 TAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAA 221742 Query 62717 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62776 |||| |||||| || | ||||| |||| || ||||| | ||| |||||||| Sbjct 221741 TTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCC 221682 Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836 ||| |||||||| || || |||||||||||| | || || | |||||||| || ||| Sbjct 221681 TTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAGG 221622 Query 62837 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62896 ||||||||| | || |||||||| | | |||||| ||| | ||| | || | Sbjct 221621 ATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATA 221562 Query 62897 CAGTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAATGCAACAGA 62950 | ||| ||||| ||| | ||| | |||||| | || |||| ||| Sbjct 221561 TAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAGA 221502 Query 62951 TGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 63010 ||| | ||||| || || || |||| | | ||||| |||||| ||| ||| || Sbjct 221501 TGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATAG 221442 Query 63011 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63070 ||||||||| || || || |||||||||| ||||||| || ||||| | ||| || Sbjct 221441 ATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTT 221382 Query 63071 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63130 || | ||| |||| ||| |||||||||||| || || ||| || ||| | | Sbjct 221381 GTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAATC 221322 Query 63131 TCGAGCCTTTATTATAGATTTGTATCTCC---TTTCTCTTTCGTATAGAGTATACAATCG 63187 | |||| || || || ||| | || ||||| ||| || ||| ||| Sbjct 221321 TTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATTT 221265 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || ||||| | ||| | |||||||||| |||||||| || | Sbjct 221264 TTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAGT 221205 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | | | ||||| |||| ||||||||| | ||| |||| ||||| ||| ||| Sbjct 221204 CCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAAA 221145 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || |||||| | ||| ||| || || || ||| ||| | | ||| || || | | Sbjct 221144 TAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAAA 221085 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 || || |||||||| ||||| | |||| || | ||| | ||| ||| || Sbjct 221084 TATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACC 221025 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCGTTTG 63486 ||||||| |||||||| || | ||| ||||||| |||||||| | |||| ||||||| Sbjct 221024 TTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTG 220966 Query 63487 ATATACCATTGGTACCGGAGATATA-GCCTCCACTGGCACGAATATTACTAATTGATAGA 63545 | |||||||| || || ||||| | | | | |||| |||| | || || | Sbjct 220965 AAATACCATTAGTTCCTCTTATATATGAATTCTGTC-CACGTATATCTTGTACTGCTACA 220907 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || ||||| ||||| || || || ||| ||||||| || ||| | || ||| Sbjct 220906 CCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCCT 220847 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || || ||| | |||| || | |||||| |||||||| | | | || Sbjct 220846 TCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGTC 220787 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || | ||||||||| || || | || || ||||| |||||| || | |||| || Sbjct 220786 CCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATAG 220727 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || || | ||| |||| ||| | ||| || || | || || | ||| | || Sbjct 220726 GTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAAA 220667 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 ||||| |||||||| | ||||| || || || || || || ||| |||| || ||| Sbjct 220666 TGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGTT 220607 Query 63846 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 ||||||||||| || | ||| ||| || ||| Sbjct 220606 TTAAAACCAAAGTAATCGTAGTTAAAATCACGT 220574 >seq139 Length=234430 Score = 187 bits (206), Expect = 3e-42 Identities = 593/906 (65%), Gaps = 20/906 (2%) Strand=Plus/Minus Query 33272 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33331 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 200119 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 200060 Query 33332 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttttt 33391 ||||| | || || ||||| ||| ||| ||||| | || |||||||| Sbjct 200059 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 200000 Query 33392 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT 33448 | | || || ||| ||| |||| |||||| || ||||| ||||| ||| | Sbjct 199999 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 199943 Query 33449 TTCACAATTCATTCCTATGAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCA 33506 | ||||||| || || | | | || |||| |||| || |||| | | |||| Sbjct 199942 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACA-TATGAAAGACCT-TTCA 199885 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT---AAT 33563 | || || | | ||| |||| | |||| |||||| || || | ||| Sbjct 199884 ACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAAT 199825 Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAAT 33623 ||| || | || | ||| ||||| || | || || ||||||||||||| | Sbjct 199824 AAAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 199768 Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 || || ||| || ||||| | | | | | ||||||| |||||| || | | | Sbjct 199767 TCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAG 199708 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || || ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 199707 AAACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAAT 199648 Query 33744 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 | |||| |||||| ||| |||||| || || || || || || || Sbjct 199647 GAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATA 199588 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 |||| || |||| ||| | || ||| || |||||| | |||| | || || Sbjct 199587 TTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATA 199528 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | | |||||| |||| ||||| || ||||| | || || |||||| ||| || | Sbjct 199527 AGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTT 199468 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTG-CTAAATTTTCATTCACTAT 33982 |||| || ||||| || || ||| | ||||| | ||| | |||||||| ||||| Sbjct 199467 TTAGCTTCTGTAATTTGAACCTCTCTTAAAAATT-TACTGGCCAAATTTTCTAATACTAT 199409 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTG 34041 |||||||| ||||||||||| || ||||||||||| ||||||| ||||| | || | Sbjct 199408 ACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT- 199350 Query 34042 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 34101 ||| ||| | |||| || | ||| | |||| ||| | |||||| |||||||||||| Sbjct 199349 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATG 199290 Query 34102 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 34161 |||| ||||| |||||||| | || ||| | || ||||| |||||| | | || Sbjct 199289 ATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGGGTACAATGTAA 199230 Query 34162 ATCTAT 34167 |||||| Sbjct 199229 ATCTAT 199224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802531613920