Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq112 614 5e-171 seq139 306 3e-78 >seq112 Length=225903 Score = 614 bits (680), Expect = 5e-171 Identities = 1053/1510 (70%), Gaps = 41/1510 (3%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA-TATATATTGCTAGT 37184 || ||||| ||||| || |||||| | ||||||||| ||| || ||||||||||| Sbjct 222085 TGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCT-GTAGTAAATATTGCTAGT 222027 Query 37185 ATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244 |||||||||| || ||||| || | ||||||||| || ||||||||||||||||| || Sbjct 222026 GTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCATAGG 221967 Query 37245 TGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCA 37304 ||||| || | | ||| || | ||||||| | |||||| | | ||| ||||||||||| Sbjct 221966 TGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATTCCA 221907 Query 37305 ATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAATACCTTTAC 37360 || ||| | | |||| |||| | |||||||||| | || |||||||||| | Sbjct 221906 ATTCCAGTATT-TGTTATCAACTTTGATATTCCACATATCAAACTGAAGAATACCTTGGC 221848 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 | |||||| | | | ||| | ||||| || ||||||||||||| ||| || ||| Sbjct 221847 TAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATTC-CA--TAG 221791 Query 37421 A---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTT 37477 | ||||| ||| ||||| || || ||||| |||||| | |||||||| |||||||| Sbjct 221790 ACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTT 221731 Query 37478 CTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGA 37537 | || ||| | | ||| | || | ||||| ||||| || || || ||||| | Sbjct 221730 CATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCCTTGTACACCAA 221671 Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 | ||||| ||||||||| || | || ||||| | ||| | || ||||||||||| Sbjct 221670 TTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAGGATAATAATTTC 221611 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGA 37657 | || || ||||| | || |||| | | ||||| |||||| || || | | Sbjct 221610 TTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATATAATTTTTTAA 221551 Query 37658 ACATAAATACGTTATTATTA------ACAAATTTACTCAACGAAATAGATCCTAGATTAC 37711 | |||| || || || | |||||||||| || | ||||||| ||| |||| Sbjct 221550 AATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAGATGCTAAGTTAC 221491 Query 37712 ATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGAT 37770 | ||||||||||||||| || | || ||| ||| || || || |||||||| || Sbjct 221490 AAACAGCAACTTCATCTG-GTGATGTATATTCTATTATTTCACAGCATAGATTACTACAT 221432 Query 37771 CTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATA 37830 ||||||| || ||||| ||||||| ||||| |||||| |||||||| || | || Sbjct 221431 TTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTGTACAACATG 221372 Query 37831 TACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTA 37890 || || ||| ||| || ||| | | ||||| ||||||| ||||| || Sbjct 221371 TATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAA--TCTTGAGCTA 221314 Query 37891 ACGATCGCTTTAAttt-----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAAT 37945 | | | ||| || ||||||| ||| || | | ||||||||| | ||| | Sbjct 221313 AT-ACAGTTTTTTTTCCTAAATTTTCTTC--TTCATACTTTTCATATAATTTTTCAAATT 221257 Query 37946 CATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTT 38005 | | |||||| || | || ||||||||||| ||||||||||| || ||| | || Sbjct 221256 CTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAGTCCAATTTT 221197 Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065 || || | || | || |||||||||||| || ||||| | ||| |||||||||| Sbjct 221196 TATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAAATAAATCTC 221137 Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | ||| ||||||| || || ||| ||||| || |||||| || ||||| || | Sbjct 221136 TAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAAATATGTCTG 221077 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 ||||||||||| ||||| | | | || |||| |||||| | || || |||| | Sbjct 221076 AATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTA 221017 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 ||||||| |||| | ||| | | ||||||||| ||||||| || || || | || | Sbjct 221016 CATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGAAATACCAT 220957 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATT 38301 | | || |||||| | | || | ||||||| |||| | ||| || || Sbjct 220956 TAGTTCCTCTTATATATGAATTCTGTCCACGTATATCTTGTACT--GCTACA--CCAATA 220901 Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 ||||||||| ||| ||| ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 220900 CCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCCTTCAATA 220841 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || | || || || | ||||||| |||||||| || ||| || || | Sbjct 220840 GAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGTCCCTGAA 220781 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 ||||||||||| || | ||||||| | || |||||| |||| || ||| |||||| Sbjct 220780 TTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATAGGTTTCT 220721 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 | | | | |||| |||| | || ||||| | ||||| ||||| | || ||| ||| Sbjct 220720 AATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAAATGCTGT 220661 Query 38542 GGTCTTTCTATTATTTTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTAT 38600 ||||||||||| ||||||||||| | ||| || ||| ||| ||||||| ||||| | Sbjct 220660 GGTCTTTCTATGATTTTATTATTAATACGTAA-TAAATATGATCTTTCTAACGTTTTAAA 220602 Query 38601 TCCAAAATAA 38610 ||||| ||| Sbjct 220601 ACCAAAGTAA 220592 >seq139 Length=234430 Score = 306 bits (338), Expect = 3e-78 Identities = 588/859 (68%), Gaps = 16/859 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| ||| ||| ||| ||| ||||| || || || |||| ||| || || | Sbjct 200100 TTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAA 200041 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| | | || || | |||| ||||||||| | |||| Sbjct 200040 TCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAAT 199981 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| |||||| || ||||| ||||||||||||||||| | ||||||| || || | Sbjct 199980 AATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATTAAG 199921 Query 11519 TCCACCGGAATAG---CAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 || || | || || | | ||| || |||| | | ||| || || | | Sbjct 199920 TCACAAGGTAGAGATTCACATATGAAAGACC---TTTCAACTTCAACAGCTTCTTTTACA 199864 Query 11576 ATCGACGTTATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAACAC 11632 || | | |||||| | | | || || | |||||| || | |||| ||| Sbjct 199863 ATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAAC---TATATATTAGACAG 199807 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||| |||||| ||||| |||||||| ||||||||||| ||| || | ||| Sbjct 199806 TTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCA 199747 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 | | | ||||||| | |||||| |||||| || |||| ||| | ||| Sbjct 199746 TGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAAACAGTATA 199687 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCCA 11811 || || ||| |||| |||||| | ||||||| || || | |||| | | |||||| Sbjct 199686 CCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATC-ATTTATCCA 199628 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 |||| |||||| ||||| || || || | || |||| ||||| | |||||| Sbjct 199627 TTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAA 199568 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 || | |||| | | |||| ||| ||| | ||||| | ||||||||| ||||||| Sbjct 199567 ATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTGA 199508 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 ||| |||||||||| |||||||||||| || || | || |||| | || || Sbjct 199507 ATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAAC 199448 Query 11992 ATCCACATAAAATCTTTCCG-CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 || | ||||| || | | | ||||| || ||| ||||||||||||| |||||||| Sbjct 199447 CTCT-CTTAAAAATTTACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAA 199389 Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTA 12110 |||||| || |||||| ||||| | ||||| | | | ||||||| || |||| | || Sbjct 199388 ATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAATTTTTCAAAATCTTTTA 199329 Query 12111 AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACA 12170 |||| |||||||||||| ||||||| | |||||||| ||| ||| || |||||| | Sbjct 199328 AATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAA 199269 Query 12171 TTTTCCAGATATCATGATA 12189 | ||| | ||| |||| Sbjct 199268 AATCCCAAACATCGGGATA 199250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513590544160