Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq112 389 5e-103 seq139 197 2e-45 >seq112 Length=225903 Score = 389 bits (430), Expect = 5e-103 Identities = 1120/1714 (65%), Gaps = 32/1714 (2%) Strand=Plus/Minus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 222277 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 222218 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 65096 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 222217 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 222158 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| | || |||| | || || || |||| ||| | | | ||| ||| Sbjct 222157 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 222098 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || |||| | ||| ||||| || || ||||||||| | |||||| | |||| Sbjct 222097 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 222038 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 ||||| || || || ||||| | ||| ||||| ||||| || ||||| | ||| |||||| Sbjct 222037 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 221978 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || ||||||||||| | | ||| ||| || || || | | || | ||||| ||||| Sbjct 221977 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 221918 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNNNTT------G 65389 || | ||||||||| | | || |||| | | Sbjct 221917 AGTTCATTCCAATTCCAGTATTT----GTTATCAACTTTGATATTCCACATATCAAACTG 221862 Query 65390 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 65448 |||||||| | || || | || | ||| |||| | || ||| || | | | || Sbjct 221861 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAG 221803 Query 65449 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 65508 ||| ||| | | ||||||||| | || || || ||||| || || | ||||||| Sbjct 221802 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 221743 Query 65509 GATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| |||||| || | ||||| |||| || ||||| | ||| ||||||| Sbjct 221742 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 221683 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 |||| |||||||| || || |||||||||||| | || || | |||||||| || || Sbjct 221682 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 221623 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 |||||||||| | || |||||||| | | |||||| ||| | ||| | || | Sbjct 221622 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 221563 Query 65689 TCAGTTTGAGAAAATCAAA---TCGCTCATCTAT---TACAAACATGTTCAATGCAACAG 65742 | ||| ||||| ||| | | ||| | |||||| | || |||| || Sbjct 221562 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 221503 Query 65743 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 |||| | |||||||| || || |||| | | ||||| |||||| ||| ||| | Sbjct 221502 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 221443 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 |||||||||| || || || |||||||||| ||||||| || ||||| | ||| | Sbjct 221442 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 221383 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 65922 | || | ||| |||| ||| |||||||||||| || || ||| || ||| | Sbjct 221382 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 221323 Query 65923 CTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 65979 || |||| || || || ||| | || |||||| ||| || | ||| ||| Sbjct 221322 CTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 221266 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 ||| || || || ||||| | ||| || |||||||||| |||||||| || | Sbjct 221265 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 221206 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 ||| | | | ||||| |||| ||||||||| | ||| |||| ||||| ||| || Sbjct 221205 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 221146 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 |||||||||| | ||| ||| || || || ||| ||| | | ||| || || | | Sbjct 221145 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 221086 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 || || ||||||| ||||| | |||| || | ||| | ||| ||| | Sbjct 221085 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 221026 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTG 66278 | ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 221025 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 220967 Query 66279 GATGTACCATTGGTCCCGGAGATATA-GCTTCCACTTGCACGAATATTACTAATTGATAG 66337 || ||||||| || || ||||| | | | | |||| |||| | || || Sbjct 220966 GAAATACCATTAGTTCCTCTTATATATGAATTC-TGTCCACGTATATCTTGTACTGCTAC 220908 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || || Sbjct 220907 ACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCC 220848 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || ||| ||| | |||| || | |||||| |||||||| | | || Sbjct 220847 TTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGT 220788 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 || | ||||||||| || || | || || ||||| |||||| || | |||| || Sbjct 220787 CCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATA 220728 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 || || | ||| |||| ||| | ||| || || | || || | ||| | || Sbjct 220727 GGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAA 220668 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 ||||| |||||||| | ||| || || || || || || || ||| |||| || || Sbjct 220667 ATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGT 220608 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671 |||||||||||| || | ||| ||| || ||| Sbjct 220607 TTTAAAACCAAAGTAATCGTAGTTAAAATCACGT 220574 >seq139 Length=234430 Score = 197 bits (218), Expect = 2e-45 Identities = 585/889 (66%), Gaps = 20/889 (2%) Strand=Plus/Minus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 200119 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 200060 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| || || || ||||| ||| || ||||| | || | |||||||| Sbjct 200059 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 200000 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 | | || || ||| ||| |||| |||||| |||||||| ||||| ||| | Sbjct 199999 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 199943 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCA 36082 | ||||||| || || | | | || |||| |||| || |||| | | |||| Sbjct 199942 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACA-TATGAAAGACCT-TTCA 199885 Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AAT 36139 | || || ||| ||| |||| | | || |||||| || || ||| Sbjct 199884 ACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAAT 199825 Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 ||| || | || | ||| ||||| |||| || || ||||||||||||| | Sbjct 199824 AAAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 199768 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGC 36258 || ||| ||| || ||||| | | | | | ||||||| |||||| || | || Sbjct 199767 TCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAG 199708 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 ||| | ||| ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 199707 AAACTA-CCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA 199649 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | |||| |||||| ||| |||||| || || || || || || || Sbjct 199648 TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTAT 199589 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | || ||||||| ||| | || ||| || |||||| | ||| | || || Sbjct 199588 ATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTAT 199529 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 | | |||||| |||| ||||| || ||||| | || ||||||||| ||| || Sbjct 199528 AAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTT 199469 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTG-CTAAATTTTCATTCACTA 36557 | |||| || ||||| || || ||| | ||||| | ||| | |||||||| |||| Sbjct 199468 TTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATT-TACTGGCCAAATTTTCTAATACTA 199410 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| ||||||||||| || ||||||||||| ||||||| ||||| || Sbjct 199409 TACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT 199350 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 ||| ||| | |||| || | ||| | |||| ||| | |||||| |||||||||||| Sbjct 199349 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATG 199290 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 36726 |||| ||||| |||||||| | || ||| | || ||||| |||||| Sbjct 199289 ATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGG 199241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157053215760