Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq112 419 3e-112 seq139 210 3e-49 >seq112 Length=225903 Score = 419 bits (464), Expect = 3e-112 Identities = 1131/1714 (66%), Gaps = 32/1714 (2%) Strand=Plus/Minus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 222277 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 222218 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 78975 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 222217 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 222158 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 ||| | || |||| | || || ||||||| ||| | | | ||| ||| Sbjct 222157 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 222098 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 || |||| | ||| ||||| || || ||||||||| | |||||| | |||| Sbjct 222097 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 222038 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 ||||| || || |||||||| | |||||||| ||||| || ||||| | ||| ||||| Sbjct 222037 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 221978 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTT 79215 || ||||||||||| | | ||| ||| || || || | | | | ||||| ||||| Sbjct 221977 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 221918 Query 79216 AGAGATTCCCAATCCCAAAG------ATCAGACGGGACAACATTCCAAAGATCATATTGT 79269 || | ||||| ||| |||| || | ||||| | |||| | || Sbjct 221917 AGTTCATTCCAATTCCAGTATTTGTTATCAACTTTGATA---TTCCACATATCAAACTGA 221861 Query 79270 AGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGC 79328 |||||||| | ||||| | | | ||| || | |||||| || | ||| || Sbjct 221860 AGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAGC 221802 Query 79329 TAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG 79388 |||||| | | |||||||| | || || || ||||| ||||| | ||||| | Sbjct 221801 TAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAA 221742 Query 79389 ATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 79447 |||| |||||| | | | || | ||||| |||| || ||||| | ||| ||||||| Sbjct 221741 TTCTTTTGCTTCATCTGAT-TCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 221683 Query 79448 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 79507 |||| |||||||| || || |||||||||||| | || || | |||||||| || || Sbjct 221682 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 221623 Query 79508 GATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCT 79567 |||||||||| | || |||||||| | | ||| || || | ||| | || | Sbjct 221622 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 221563 Query 79568 TTAGTTTGAGAAAATCAAA---TCGTCCATCTAT---TACAAACATGTTCAACGCGACAG 79621 || ||| ||||| ||| | | ||| | |||||| | || || | || Sbjct 221562 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 221503 Query 79622 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGA 79681 |||| | |||||||| || || |||| | | ||||| |||||||||| ||| | Sbjct 221502 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 221443 Query 79682 GGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 79741 | |||||||| ||||| || |||||||||| ||||||| || ||||| | ||| | Sbjct 221442 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 221383 Query 79742 TATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 79801 | || | ||| | || ||| |||||||||||| || || ||| || ||| | Sbjct 221382 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 221323 Query 79802 CTCGAGCCTTTATTATAGACTTGTATCTC---TTTTCTCTTTCGTATTGTGTATATAATC 79858 || |||| || || || || | || |||||| ||| || | | ||||||| Sbjct 221322 CTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 221266 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 ||| || || || ||||| || || || |||||||| | |||||||| || | Sbjct 221265 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 221206 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 ||| | | || ||||| |||| ||||||||| | ||| |||| ||||| ||| || Sbjct 221205 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 221146 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 ||| |||||| | ||| || || || || ||| ||| | | ||| || || | | Sbjct 221145 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 221086 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 || || |||||||| ||||| | |||| || | ||| || ||| ||| | Sbjct 221085 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 221026 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATTG 80157 | ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 221025 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 220967 Query 80158 GATGTACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAG 80216 || ||||||| || || ||||| | | | | |||| |||| | || || Sbjct 220966 GAAATACCATTAGTTCCTCTTATATATGAATTCTGTC-CACGTATATCTTGTACTGCTAC 220908 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || || Sbjct 220907 ACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCC 220848 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || || ||| | |||| || | |||||| |||||||| | | || Sbjct 220847 TTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGT 220788 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || | ||||||||| || || | || || ||||| |||||| |||| |||| || Sbjct 220787 CCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATA 220728 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 || || | ||| ||||| ||| | ||| || || | | || | ||| | || Sbjct 220727 GGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAA 220668 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| |||||||| | ||| || ||||| || || || || ||| |||| || || Sbjct 220667 ATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGT 220608 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 |||||||||||| || | ||| ||| || ||| Sbjct 220607 TTTAAAACCAAAGTAATCGTAGTTAAAATCACGT 220574 >seq139 Length=234430 Score = 210 bits (232), Expect = 3e-49 Identities = 597/906 (66%), Gaps = 20/906 (2%) Strand=Plus/Minus Query 49650 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 49709 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 200119 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 200060 Query 49710 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 49769 ||||| | || || ||||| ||| ||| ||||| | || | |||||||| Sbjct 200059 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 200000 Query 49770 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT 49826 | | || || ||| ||| |||| ||| || |||||||| ||||| ||| | Sbjct 199999 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 199943 Query 49827 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG-TAAGAAATTCTTGTTCAA 49885 | ||||||| || || | | | || |||| || || |||| | | ||||| Sbjct 199942 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCT-TTCAA 199884 Query 49886 TGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AATA 49942 || || ||| ||| |||| | |||| |||||| || || |||| Sbjct 199883 CTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATA 199824 Query 49943 AATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTT 50002 || || | || | ||| ||||| || | || || |||||||||||||||| Sbjct 199823 AAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTT 199767 Query 50003 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCA 50061 | ||| ||| || ||||| | | | | | ||||||| |||||| || | || | Sbjct 199766 CATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGA 199707 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || ||| | ||| | || ||||| || ||| || |||| ||| ||| || | Sbjct 199706 AACTACC-ACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA- 199649 Query 50122 CTGGCGCTGT--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 50179 || ||| ||| |||||| ||| |||||| || || || || || || | Sbjct 199648 -TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTA 199590 Query 50180 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 50239 | |||| || |||| ||| | || ||| || |||||| | |||| | || | Sbjct 199589 TATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTA 199530 Query 50240 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 50299 | | | |||||| |||| ||||| || ||||| | || || |||||| ||| || Sbjct 199529 TAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATT 199470 Query 50300 ATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTA 50359 | |||| || ||||| || || ||| | ||||| || |||||||| |||| Sbjct 199469 TTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTA 199410 Query 50360 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTG 50419 | || ||||| ||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 199409 TACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT 199350 Query 50420 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 50479 ||| ||| | |||| || | ||| | |||| ||||| |||||| |||||||||||| Sbjct 199349 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATG 199290 Query 50480 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 50539 |||| ||||| |||||||| | || ||| | || ||||| |||||| | | || Sbjct 199289 ATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGGGTACAATGTAA 199230 Query 50540 ATCTAT 50545 |||||| Sbjct 199229 ATCTAT 199224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251615418960