Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq139 228 8e-55 >seq139 Length=234430 Score = 228 bits (252), Expect = 8e-55 Identities = 588/883 (67%), Gaps = 27/883 (3%) Strand=Plus/Minus Query 13543 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13602 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 200138 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 200079 Query 13603 TTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTA 13662 ||||||| ||||| ||||| |||| || || || ||||| ||| ||| |||||| Sbjct 200078 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 200019 Query 13663 TTGACATAAACACTTTATCACAACCTAG---TTCTAATAGTAATCTATCAGCAATAAACT 13719 ||| | ||| | ||| |||||||| |||||||| ||| ||| || | ||| | Sbjct 200018 TTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAATA---ATCGATCTGCTACAAATT 199962 Query 13720 CAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGG 13779 ||||||| ||||||||||| ||||||| || |||| | ||| | | ||| Sbjct 199961 CAATATACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAAGGTAG-AGATTCA 199903 Query 13780 T-TAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTA 13838 || || |||| | ||||| ||||||| |||| || ||| || || | Sbjct 199902 CATATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCT 199843 Query 13839 GAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 | | || |||||| | || | |||| ||| |||||| ||| | || | Sbjct 199842 G--GTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAAATCTGTATGTAATCCTT 199785 Query 13897 CATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGttttttt 13955 ||||||||||||| ||||| || ||| || | ||| || || | | ||||||| Sbjct 199784 CATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTA 199726 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015 |||||||| || ||| || || ||| | ||| || ||||| ||| ||| Sbjct 199725 AACCAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTCAACACATGCATTTGCT 199666 Query 14016 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAt 14075 | | || |||| |||| || | | | || |||||||||| ||||| | | Sbjct 199665 ACAATTCTTTCTGCAAATGAATTTGTATCATT---TATCCATTTTGCTGCCCAAAGTGCT 199609 Query 14076 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT--CCTTCTCTTTAG 14133 || || |||| || |||||||||||| |||||||| | | |||| ||| Sbjct 199608 TTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCA 199549 Query 14134 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14193 | || | || ||| | |||||||| ||||| |||| || ||||| ||||||| | Sbjct 199548 TCTTTTATATAATTGTCT--ATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTG 199491 Query 14194 CTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTT 14253 |||| ||||| ||||| | ||||||| | ||| || || ||||| | Sbjct 199490 CTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTAC 199431 Query 14254 CGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14313 |||||||||||| ||||||||||||||||||||||||||||| |||| | ||||| Sbjct 199430 TGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 199371 Query 14314 TAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGAT 14370 |||| | ||| |||||| | | | ||||| |||| |||||| | || | || Sbjct 199370 TAAAAT---GCTTTTCATTCTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAAT 199314 Query 14371 CTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 ||| ||| ||| |||||||||| || | ||||||||||| Sbjct 199313 CTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 199271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716522507600