Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq139 219 4e-52 >seq139 Length=234430 Score = 219 bits (242), Expect = 4e-52 Identities = 587/883 (66%), Gaps = 27/883 (3%) Strand=Plus/Minus Query 13331 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13390 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 200138 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 200079 Query 13391 TTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTG 13450 ||||||||||||| ||||| |||| || || || ||||| ||| || |||||| Sbjct 200078 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 200019 Query 13451 TTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAA 13510 ||| | ||| | ||| |||||||| | |||||||| ||| || | ||| |||| Sbjct 200018 TTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAATAATCGATCTGCTACAAATTCAA 199959 Query 13511 TATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATT-AGTT 13569 |||| ||||||||||| ||||||| || |||| | ||| | | ||| | | Sbjct 199958 TATACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAAGGTAG-AGATTCACAT 199900 Query 13570 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 | || |||| | ||||| || |||| |||| | |||| || || | | Sbjct 199899 ATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTG-- 199842 Query 13630 GGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13687 | || |||||| | || | |||| ||| |||||| ||| | || |||| Sbjct 199841 GTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAAATCTGTATGTAATCCTTCAT 199782 Query 13688 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttttAAC 13746 |||||||||| ||||| || ||| || | ||| || || | | ||||||| ||| Sbjct 199781 CTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTAAAC 199723 Query 13747 CAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATT 13806 ||||| || ||| ||| || ||| | ||| || ||||| ||| |||| Sbjct 199722 CAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACA 199663 Query 13807 AGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAtt 13864 | || |||| |||| || ||||| | || ||||||||| ||||| | || Sbjct 199662 ATTCTTTCTGCAAATGAA-----TTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTT 199608 Query 13865 tttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT--CCTTCTCTTTAGT 13922 | || |||| || |||| || |||| ||||||| | | |||| ||| | Sbjct 199607 TATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCAT 199548 Query 13923 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGC 13982 || | || ||| | |||||||| ||||| |||| || ||||| ||||| | || Sbjct 199547 CTTTTATATAATTGTCT--ATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGC 199490 Query 13983 TATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTC 14042 ||| ||||| ||||| | ||||||||| ||| ||||| ||||| || | Sbjct 199489 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAAT-TTAC 199431 Query 14043 TG-CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14101 || |||| ||||| || |||||||||||||||||||||||||| |||| | ||||| Sbjct 199430 TGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 199371 Query 14102 TAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14158 |||| | ||| |||||| | | | ||||| |||| |||||| | || | || Sbjct 199370 TAAAAT---GCTTTTCATTCTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAAT 199314 Query 14159 CTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||| ||| ||| |||||||||| || | ||||||||||| Sbjct 199313 CTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 199271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577349762960