Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq112 385 6e-102 seq139 197 2e-45 >seq112 Length=225903 Score = 385 bits (426), Expect = 6e-102 Identities = 1143/1751 (65%), Gaps = 38/1751 (2%) Strand=Plus/Minus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 222277 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 222218 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 71058 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 222217 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 222158 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 ||| | ||||||| | ||| || ||||||| ||| | | | ||| ||| Sbjct 222157 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 222098 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 || |||| | ||||||||| || || ||||||||| | |||||| | |||| Sbjct 222097 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 222038 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 ||||| || || || ||||| | || ||||| ||||| || ||||| | ||| |||||| Sbjct 222037 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 221978 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 || ||||||||||| | | || ||| || || |||||| | ||||| ||||| Sbjct 221977 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 221918 Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTA-CAACNNNNNNNNNNNNNNNNNNNNNN-- 71355 || | ||||||||| | || || |||| Sbjct 221917 AGTTCATTCCAATTCCAGTATT----TGTTATCAACTTTGATATTCCACATATCAAACTG 221862 Query 71356 ----ATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGG 71410 || || | ||||| | | | ||| |||| | || ||| || | ||| | Sbjct 221861 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAG 221803 Query 71411 CTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA 71470 ||| ||| | | |||||||| |||| || || ||||| ||||| | ||||| | Sbjct 221802 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 221743 Query 71471 GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 |||| |||||| || | ||||| |||| || ||||| | ||| ||||||| Sbjct 221742 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 221683 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 |||| || ||||| || || ||||| |||||| | || || | |||||||| || || Sbjct 221682 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 221623 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 |||||||||| | || |||||||| | | |||||| || | ||| | || | Sbjct 221622 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 221563 Query 71651 TTAGTTTGAGAAAATCAAA---TCTCCCATCTAT---TACAAAC--ACGTTCAAGGCAAC 71702 || ||| ||||| ||| | | ||| | |||||| || | || |||| Sbjct 221562 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACAT--AAAGCAAT 221505 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 |||||| | |||||||| || || |||| | | ||||| ||| |||||| ||| Sbjct 221504 AGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCA 221445 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 221444 TAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATC 221385 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || | || | || ||| |||||||||||| || || ||| || ||| | Sbjct 221384 TTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAA 221325 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTC---TTTTCTCTTTCGTATTGTGTATATAA 71939 || |||| || || | | || | || |||||| ||| || | | |||||| Sbjct 221324 ATCTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAA 221268 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATCCAGGACATTCATTCGGACACATCA 71998 | ||| || || || ||||| | || || || || ||||||||||| |||||||| | Sbjct 221267 TTTTTCAAATTCTTCACCCCATGT-TTCACTCAAACCTGGACATTCATTTGGACACATTA 221209 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 | | ||| | | || || || |||| ||||||||| | ||| |||| ||||| ||| Sbjct 221208 AAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCAT 221149 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 ||||| |||||| | ||| || || || || ||| ||| | | ||| || || Sbjct 221148 AAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATT 221089 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | || || |||||||| ||||| | |||| || | ||| | ||| || Sbjct 221088 CAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTC 221029 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCA 72237 | || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || Sbjct 221028 CACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCG 220970 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATTGA 72296 || || |||||| || || ||||| | | | | |||| |||| | || Sbjct 220969 TTTGAAATACCATTAGTTCCTCTTATATATGAATTCTGTC-CACGTATATCTTGTACTGC 220911 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || Sbjct 220910 TACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAAT 220851 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || || ||| ||| | |||| || | |||||| |||||||| | | Sbjct 220850 TCCTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGG 220791 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || | ||||||||| || || | || || ||||| |||||| |||| |||| Sbjct 220790 TGTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATG 220731 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || || | ||| ||||| ||| | |||||| || | | || | ||| | Sbjct 220730 ATAGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAAT 220671 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 || |||||| |||||||| | ||| || ||||| || || || || ||| |||| || Sbjct 220670 CAAATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAA 220611 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 |||||||||||||| || | ||| ||| || ||| ||| ||| | ||| | Sbjct 220610 CGTTTTAAAACCAAAGTAATCGTAGTTAAAATCACGTGTATAATCAATCTCTTTATTTAA 220551 Query 72657 TTTATCCTTAT 72667 | ||||||||| Sbjct 220550 TCTATCCTTAT 220540 >seq139 Length=234430 Score = 197 bits (218), Expect = 2e-45 Identities = 593/905 (66%), Gaps = 18/905 (2%) Strand=Plus/Minus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 || || |||||| || ||| || || ||| | ||||||||||| ||||| || || || Sbjct 200119 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 200060 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 ||||| | || || ||||| ||| ||| ||||| | || | |||||||| Sbjct 200059 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 200000 Query 41875 AAATCCCAA---TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT 41931 | | || || ||| ||| |||| |||||| | ||||| ||||| ||| | Sbjct 199999 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 199943 Query 41932 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCA 41989 | ||||||| || || | | | || |||| |||| || |||| | | |||| Sbjct 199942 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACA-TATGAAAGACCT-TTCA 199885 Query 41990 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AAT 42046 | || || ||| ||| |||| | | || |||||| || || ||| Sbjct 199884 ACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAAT 199825 Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||| || | || | ||| ||||| || | || |||||||||||||||| | Sbjct 199824 AAAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 199768 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGC 42165 || ||| ||| || ||||| | | | | | ||||||| |||||| |||| || Sbjct 199767 TCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAG 199708 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| | ||| ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 199707 AAACTA-CCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA 199649 Query 42226 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 42285 | |||| |||||| ||| |||||| || || || || || || || Sbjct 199648 TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTAT 199589 Query 42286 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGAT 42345 |||| || |||| ||| | || ||| || |||||| | ||| | || || Sbjct 199588 ATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTAT 199529 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 | | |||||| |||||||||| || ||||| | || || |||||| ||| || Sbjct 199528 AAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTT 199469 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTAT 42465 | | || || |||| || || ||| | ||||| || |||||||| ||||| Sbjct 199468 TTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTAT 199409 Query 42466 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525 || ||||| ||||||||||| || ||||||||||| ||||||| ||||| | | | Sbjct 199408 ACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATT 199349 Query 42526 TAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 |||||| | |||| || | ||| | |||| ||||| |||||| | ||||||||||| Sbjct 199348 TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGA 199289 Query 42586 TGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||||||||| |||||||| | || ||| | ||| ||||| ||||||| | | ||| Sbjct 199288 TGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGGGTACAATGTAAA 199229 Query 42646 TCTAT 42650 ||||| Sbjct 199228 TCTAT 199224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123142994640