Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq213 104 2e-17 seq112 86.0 6e-12 >seq213 Length=18882 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || || ||||| || | ||||||||||| || ||||| ||||| Sbjct 354 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 413 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| || || | || | | |||||||||||| || Sbjct 414 AATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGA 473 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| |||| | || | || |||| | |||||| Sbjct 474 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTACA 533 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| |||||||| ||||| Sbjct 534 TCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCAT 580 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || || ||||| || | ||||||||||| || ||||| ||||| Sbjct 816 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 875 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| || ||| | || | | ||| |||||||| || Sbjct 876 AATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 935 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| |||| | || | ||||| | | |||||| Sbjct 936 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACA 995 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| || ||||| ||||| Sbjct 996 TCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 1042 >seq112 Length=225903 Score = 86.0 bits (94), Expect = 6e-12 Identities = 176/261 (67%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 157334 GGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAAT 157393 ||||| || || ||||||||||| | ||| | ||||| | ||| | |||||||||| Sbjct 221230 GGACATTCATTTGGACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAAT 221171 Query 157394 ATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATG 157453 | ||| |||||||| | ||| | | ||||| | ||| | ||||| | ||| Sbjct 221170 AAATCTGGAACCCAAACAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGA 221111 Query 157454 TTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCT 157513 ||| | || | || || || | ||||| ||||||| ||||||| || ||||| Sbjct 221110 TTTTTTCTCAAATCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCA 221051 Query 157514 TGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACT 157570 | |||||||| || ||||||||||| || | | | ||| ||||||||| Sbjct 221050 AATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACT 220991 Query 157571 CGCAGCATTGGTAGCAGTCCG 157591 | | |||||||| | |||| Sbjct 220990 CTTAACATTGGTACTAATCCG 220970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002269680480