Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq213 143 2e-29 seq100 93.3 3e-14 >seq213 Length=18882 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| ||| ||||| || | || || ||||| || ||||| ||||| | Sbjct 354 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 413 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || ||| |||| || | ||| || ||| |||| Sbjct 414 AATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGA 473 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| || || |||||| ||||||| | || || ||||| | || |||||| Sbjct 474 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATC-CGATGATTCTAC 532 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| || ||||||| ||||| || || || ||||| Sbjct 533 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCAT 580 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| ||| ||||| || ||||| || ||||| || ||||| ||||| | Sbjct 585 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 644 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| |||||||| || || |||| || | |||||| ||| |||| Sbjct 645 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 704 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| ||||||| | || || ||||| || ||| Sbjct 705 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 764 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| | ||||| || || || ||||| Sbjct 765 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCAT 811 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| ||| ||||| || | || || ||||| || ||||| ||||| | Sbjct 816 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 875 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || || |||| || | |||||| ||| |||| Sbjct 876 AATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 935 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| ||||||| | || ||||| || ||||||| Sbjct 936 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACA 995 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || |||| ||||| ||||| || ||||| Sbjct 996 TCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 1042 >seq100 Length=495214 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 15164 AGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTG 15223 || ||||| ||||| || || |||||||| ||| | || | | |||||||||||| Sbjct 295298 AGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 295239 Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-CACAAATTTTGCT 15282 || || | || || | ||||| |||| |||||| |||| || | | || ||||||| Sbjct 295238 CCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 295179 Query 15283 CTTTACAATTTCTATGGTATCGCTATT--TTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || | | |||| || |||| ||| | ||| || || | || ||| ||||| || | Sbjct 295178 -TTAATATTTTCAATTGTAT--CTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTT 295122 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 | |||||||| || |||||||| |||| Sbjct 295121 AATGTTTTTACGAATATTTGCATTTTTG 295094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170751491074