Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq139 223 3e-53 >seq139 Length=234430 Score = 223 bits (246), Expect = 3e-53 Identities = 557/839 (66%), Gaps = 13/839 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| ||||| || ||| | |||||||||||||||||||||||||| || ||||| Sbjct 200101 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 200042 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| ||| ||||||||||| | | || | |||| ||| ||||| | ||| Sbjct 200041 ATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAA 199982 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||| || || ||||| || || ||||| |||||| | ||||| || ||||| Sbjct 199981 TAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATTAA 199922 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| || || |||| | ||||| ||||| | || || Sbjct 199921 GTCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAAT 199862 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | | | || | ||| | | |||| || || | || | ||| ||| Sbjct 199861 ATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAA 199802 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||| || ||||||||||||||||| ||||| || || ||| || || || | | Sbjct 199801 ATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAA 199742 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | ||||||||| |||||| |||||| || ||| ||| | ||| ||||| Sbjct 199741 TTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTC 199682 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||| |||| |||| | ||||| || | | | ||| || | |||||| || Sbjct 199681 AACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTATCATTTATCCATTT 199625 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 | ||||| |||||| | ||||| || | | |||||||| || || | |||||||| Sbjct 199624 TGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAATAAAT 199566 Query 13398 ---AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 || || || | | ||| |||||| | ||||| | ||| ||||| |||||| Sbjct 199565 TTAAACGTTCTTTTTCA---TCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTG 199509 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 |||| |||||||||| |||||||| || ||||| | |||| |||| | |||| Sbjct 199508 AATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAA 199449 Query 13515 CTTCGGAGTAAAATCTTTCTG-CTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 | || ||||| || ||| | || ||||| ||||| || |||||||| |||||| Sbjct 199448 CCTCTCTTAAAAAT-TTACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAA 199390 Query 13574 aaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGA 13633 || || | || || |||||||| | ||||| || || || ||| ||||| Sbjct 199389 AATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAATTTTTCAAAATCTTTT 199330 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||||| |||||||||||| || ||| | |||||||| || || | || || ||||| Sbjct 199329 AAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 199271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972346527428