Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq213 176 1e-38 seq100 140 7e-28 seq139 107 4e-18 >seq213 Length=18882 Score = 176 bits (194), Expect = 1e-38 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| ||||| |||||||||||||| || ||||| || || Sbjct 816 CCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 874 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || || |||| ||||||||| ||||| |||| || |||||||| || || Sbjct 875 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 934 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| ||||| ||||| || || |||||||| || | ||| || | |||||| Sbjct 935 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 994 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| || || | ||||| ||||||||||||||| Sbjct 995 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 Score = 163 bits (180), Expect = 7e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| ||||| |||||||||||||| || ||||| || || Sbjct 354 CCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 412 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || || |||| ||||||||| || || |||| || || ||||| || || Sbjct 413 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGG 472 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| ||||| ||||| || || |||||||| || | ||||| | |||||| Sbjct 473 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTAC 532 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || ||||| || || | ||||| || |||||||||||| Sbjct 533 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Score = 147 bits (162), Expect = 5e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| | | |||| || | ||||| |||||||| || ||||| || || Sbjct 584 TCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGA 643 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || ||||| | ||||||||| ||||| |||| || |||||||| || || Sbjct 644 TAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 703 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTA 104510 |||||||| ||||| ||||| || || |||||||| || | ||||| | ||| || | Sbjct 704 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATC-CGAGGACTCAA 762 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || | || || ||||| || || | ||||| || |||||||||||| Sbjct 763 CATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 129 bits (142), Expect = 1e-24 Identities = 131/168 (78%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| |||||| |||||||| || || || ||||| || | Sbjct 1047 CCTCCTCTTAATCGTAAG-ACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 1105 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || ||||| | ||| ||||| ||||| || | || || |||||||| || Sbjct 1106 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 1165 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 ||||||||| ||||||||||| || || |||||||| || | ||||| Sbjct 1166 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATC 1213 >seq100 Length=495214 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| ||||| || ||| || |||| | || ||||| ||||||||| Sbjct 295295 GTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTTCCC 295236 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| || |||| || | || ||| |||| ||||||||||| |||||||| Sbjct 295235 GCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTA 295176 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | |||||| | ||||| | ||| ||||| || | ||| || || || | | |||| Sbjct 295175 ATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTT 295116 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||| ||||| |||||||| Sbjct 295115 TTTACGAATATTTGCATTTT 295096 >seq139 Length=234430 Score = 107 bits (118), Expect = 4e-18 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAAAAA 268818 || || |||||||| | |||||| ||||| | || ||| |||| ||||| |||||| Sbjct 199286 GCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAAA 199345 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATAT-TCTT-GCGTTTTTTGCAGTTAGT 268876 || ||| |||| || | |||| ||| | || | || || |||||||||| |||| Sbjct 199346 TT--AAATGAGAATGAAAAGCATTT-TATTAAACATGTATTAGCATTTTTTGCAGCTAGT 199402 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||| || |||||| | | || || | |||||| || ||| | ||| Sbjct 199403 GATGGTATAGTATTAGAAAATTTGGCCAGTAAATTTTTAAGAGAGGTTCAAATTACAGAA 199462 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | | |||||| ||| || ||||| | |||||||| |||||||| | || ||| Sbjct 199463 GCTAAAAAATTTTACTCATTTCAAATAGCAGTGGAAAATATACATTCAGAAACATATAGT 199522 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAA 269032 || | ||||| | ||||||| | ||| | || ||| Sbjct 199523 TTACTTATAGACAATTATATAAAAGATGAAAAAGAA 199558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151370164113112