Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1007 176 5e-39 seq37 125 9e-24 >seq1007 Length=209773 Score = 176 bits (194), Expect = 5e-39 Identities = 472/714 (66%), Gaps = 27/714 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | ||| | || | | ||||| ||||||| || || Sbjct 187566 AATTTTAATTTTGAAGAATTAGGAATTGGAGCATTAGATGAAGAATTTAAGACAATATTT 187507 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTT--CCTATCGAAATAATaaaaaaaTTAGGCTGTA 164509 ||| || | |||||| |||| | || || | | | ||| | ||| || |||| || Sbjct 187506 AGAAGAACTTTTGCTAGTAGA--ATTTACCCAAACTATATAGTTAAACAACTAGGTATTA 187449 Query 164510 AACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTC 164569 ||||| | || ||| || | || |||| ||||| ||| || ||||||||||| || Sbjct 187448 AACATGTTAAGGGACTTATCTTGTATGGTCCTCCAGGTACAGGAAAAACATTAATCGCAA 187389 Query 164570 GATGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 || || | | || | || || | | || || |||||| ||||||| || ||| | Sbjct 187388 GACAGATAGGTAAAACATTAAATGCAAGAGAACCA--AAAATTATTAATGGACCAGAAAT 187331 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || ||||||||||| ||||||||| ||| || |||| || ||| | || ||||| Sbjct 187330 ATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAAATTTATTTAAAGATGCTGA 187271 Query 164688 AGAAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 | |||| | ||| | || || | | | ||||||| ||||| | | || || | Sbjct 187270 AATAGAATATAAACAGAG-TGGGGAAAATTCTTTATTACATATTATTATACTAGACGAAA 187212 Query 164747 TAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATATTA------TTCATGATG 164791 | |||||| | || | | || | || || | || || | ||||| Sbjct 187211 TTGATGCTATATGTAGACAAAGAGGAAATTCCTTTTCCAGTAGTACTGGAGTAAATGATA 187152 Query 164792 CAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAAT-CCTTAAATAATATTTTA 164850 | || |||||||| ||||| ||||| ||||| || |||| ||||||||||| | Sbjct 187151 GTATAGTAAATCAGTTACTTTCCAAAATTGATGGAGT-GAATAGTTTAAATAATATACTT 187093 Query 164851 ATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGA 164910 || | |||||||| || | ||| | |||||||| || || ||| ||||||| | Sbjct 187092 CTTATCGGTATGACAAATAGGATAGATCTTATTGATGAAGCATTGTTAAGACCTGGAAGG 187033 Query 164911 TTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAA 164970 || ||||| | || |||||| | || | || |||||| | ||||||| |||||| Sbjct 187032 TTTGAATTACATATTGAAATATCTCTTCCAAATAAGGAAGGAAGAATTCAAATATTAAAA 186973 Query 164971 GTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAA 165030 | ||| || |||| | || ||| |||| ||| ||||| || || | || Sbjct 186972 ATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGTCCAGATGTTAATATAGAAGAA 186913 Query 165031 ATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||||| |||| |||| | ||||| ||| | || || |||||| || Sbjct 186912 TTAGCTGAAAAAACACCTAATTTTTCAGGTGCAGAAATTGAAGGTTTAGTACGA 186859 >seq37 Length=214198 Score = 125 bits (138), Expect = 9e-24 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 6896 CTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATC 6955 ||||||||| | || || || | || || || || | ||| || || ||||| | | Sbjct 55136 CTTGAGCAAGCATGTAGGTGAAAATTGAGTAGGAGGCAATATTGAAGGGAACACCAAGAC 55077 Query 6956 CCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAAT 7014 | | ||| |||| |||||| ||| ||| ||||| | || | | ||||||| Sbjct 55076 CTAAATCACAAGATCGTTGATA-CATGATACATGATAATTTCCCATCGAAAATATAAAAT 55018 Query 7015 TGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCA 7074 || || || | |||||| || ||||| | | ||| | ||| | |||||| ||| Sbjct 55017 TGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATTCCATGCA 54958 Query 7075 GTCATTAAAATACGTCTATCATTTGG---ATTTGTTTTTAATTTTGTTATAATTATTTGT 7131 || | ||| | |||| |||| |||| || | || ||| ||||| ||| | Sbjct 54957 CACAAAATAATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTT---ATAATATTTTTT 54901 Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTAGCTCCAAA 7190 | ||||| || || | | |||||||||| || ||| |||| |||| | ||||||||| Sbjct 54900 AGCTGATCAATTCCTTTATTTTCATAATTATCAT-ACATATTTGTATATTCAGCTCCAAA 54842 Query 7191 ATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 ||||||||||||||| ||||||||||||||||||||| Sbjct 54841 ATGTCTCCATTGAAAACCATAAATAGGACCTAAATCA 54805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595857743762400