Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq139 201 1e-46 >seq139 Length=234430 Score = 201 bits (222), Expect = 1e-46 Identities = 590/904 (65%), Gaps = 13/904 (1%) Strand=Plus/Minus Query 21149 AAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTT 21208 ||||| | ||| | | ||| | ||||| || ||| ||||||||| ||| | |||| Sbjct 200136 AAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTT 200077 Query 21209 TCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCA 21268 || ||||| ||||| ||||||| | || || | ||||| ||| ||| ||||||| Sbjct 200076 TCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTT 200017 Query 21269 GATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATA 21328 | ||| ||||| |||||| | | |||||||| ||||||||||||||| ||| Sbjct 200016 GCAAAAAAAATTTTTGAACAACCTAAACATTCTAATAATCGATCTGCTACAAATTCAATA 199957 Query 21329 TATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAA 21388 || ||| |||||||| ||||||| || || || | ||| |||| || | Sbjct 199956 TACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATG 199897 Query 21389 AAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG 21448 ||||| |||| | || ||||| | |||||| | | | | | | || | Sbjct 199896 AAAGACCTTTCAACTTCAACAGCTTCTTTTACAATATTTTTAA--CAACTTCTTCTGGTA 199839 Query 21449 GGATACAAT--AATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCC 21506 | || | ||| || | || | ||| |||||| ||| || |||||||| | Sbjct 199838 GTTTATTTTCTAATAAACTATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTC 199779 Query 21507 TACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAA-CCAA 21565 |||| |||| |||||| ||| || | || | | | | | | |||||||| |||| Sbjct 199778 TACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATT-TGTTTTGTTTTTTAAACCAA 199720 Query 21566 AATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAA 21624 || || | | || | || || ||| | || || ||||| ||| ||| || | Sbjct 199719 AAAATAG-CACAGAAACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACAAT 199661 Query 21625 TCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TT 21683 || ||| | ||| | | | |||| |||||||||| ||||||| ||| || || Sbjct 199660 TCTTTCTGCAAATGAA---TTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATT 199604 Query 21684 CTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGG 21743 ||| | | | | | | |||||||| | || | || ||| | | |||| Sbjct 199603 CTTAACTGCTGGTATATTT-TCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTT 199545 Query 21744 TTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCT 21803 |||| |||||| |||| |||||||||||||| | ||||| | Sbjct 199544 TTATATAATTGTCTATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTT 199485 Query 21804 GAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCA 21863 ||||| |||||| | | || |||| | ||||||||| ||||| |||| Sbjct 199484 GAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCA 199425 Query 21864 AGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAAT 21923 | ||||| |||||| |||||||| || ||||||||||| |||| || ||| ||||||| Sbjct 199424 AATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT 199365 Query 21924 ATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTT 21983 ||| || || ||||||||| ||||| |||||| |||||||||||| ||||| Sbjct 199364 GCTTTTCATTCTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTT 199305 Query 21984 CAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTA 22043 ||| ||||||||| || || |||||||| | | ||| | ||| ||||| | Sbjct 199304 CAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAA 199245 Query 22044 TTGG 22047 |||| Sbjct 199244 TTGG 199241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531888074273360