Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq112 383 2e-101 seq139 192 7e-44 >seq112 Length=225903 Score = 383 bits (424), Expect = 2e-101 Identities = 1119/1714 (65%), Gaps = 32/1714 (2%) Strand=Plus/Minus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 222277 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 222218 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 62252 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 222217 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 222158 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 ||| | || |||| | || || || |||| ||| | | | ||| ||| Sbjct 222157 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 222098 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 || |||| | ||| ||||| || || ||||||||| | |||||| | |||| Sbjct 222097 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 222038 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 ||||| || || || ||||| | || ||||| ||||| || ||||| | ||| |||||| Sbjct 222037 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 221978 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62492 || ||||||||||| | | ||| ||| || || || | | || | ||||| ||||| Sbjct 221977 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 221918 Query 62493 AGAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNNNTT------G 62545 || | ||||||||| | | || |||| | | Sbjct 221917 AGTTCATTCCAATTCCAGTATTT----GTTATCAACTTTGATATTCCACATATCAAACTG 221862 Query 62546 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 62604 |||||||| | || || | || | ||| |||| | || ||| || | | | || Sbjct 221861 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAG 221803 Query 62605 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 62664 ||| ||| | | ||||||||| | || || || ||||| || || | ||||||| Sbjct 221802 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 221743 Query 62665 GATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62724 |||| |||||| || | ||||| |||| || ||||| | ||| ||||||| Sbjct 221742 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 221683 Query 62725 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62784 |||| |||||||| || || |||||||||||| | || || | |||||||| || || Sbjct 221682 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 221623 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62844 |||||||||| | || |||||||| | | |||||| ||| | ||| | || | Sbjct 221622 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 221563 Query 62845 TCAGTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAAGGCAACAG 62898 | ||| ||||| ||| | ||| | |||||| | || |||| || Sbjct 221562 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 221503 Query 62899 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958 |||| | |||||||| || || |||| | | ||||| |||||| ||| ||| | Sbjct 221502 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 221443 Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018 |||||||||| || || || |||||||||| ||||||| || ||||| | ||| | Sbjct 221442 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 221383 Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078 | || | ||| |||| ||| |||||||||||| || || ||| || ||| | Sbjct 221382 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 221323 Query 63079 CTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAATC 63135 || |||| || || || ||| | || ||||| ||| || | ||| ||| Sbjct 221322 CTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 221266 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 ||| || || || ||||| | ||| || |||||||||| |||||||| || | Sbjct 221265 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 221206 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 ||| | | | ||||| |||| ||||||||| | ||| |||| ||||| ||| || Sbjct 221205 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 221146 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 ||| |||||| | ||| ||| || || || ||| ||| | | ||| || || | | Sbjct 221145 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 221086 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 || || |||||||| ||||| | |||| || | ||| | ||| ||| | Sbjct 221085 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 221026 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTT 63434 | ||||||| |||||||| || | ||| ||||||| |||||||| | |||| |||||| Sbjct 221025 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 220967 Query 63435 GATATACCATTGGTACCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAG 63493 || |||||||| || || ||||| | | | | |||| |||| | || || Sbjct 220966 GAAATACCATTAGTTCCTCTTATATATGAATTCTGT-CCACGTATATCTTGTACTGCTAC 220908 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || || Sbjct 220907 ACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCC 220848 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || || ||| | |||| || | |||||| |||||||| | | || Sbjct 220847 TTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGT 220788 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || | ||||||||| || || | || || ||||| |||||| || | |||| || Sbjct 220787 CCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATA 220728 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || || | ||| |||| ||| | ||| || || | || || | ||| | || Sbjct 220727 GGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAA 220668 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 ||||| |||||||| | ||| || || || || || || || ||| |||| || || Sbjct 220667 ATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGT 220608 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 |||||||||||| || | ||| ||| || ||| Sbjct 220607 TTTAAAACCAAAGTAATCGTAGTTAAAATCACGT 220574 >seq139 Length=234430 Score = 192 bits (212), Expect = 7e-44 Identities = 565/859 (66%), Gaps = 20/859 (2%) Strand=Plus/Minus Query 32994 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33053 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 200119 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 200060 Query 33054 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 33113 ||||| | || || ||||| ||| ||| ||||| | || | |||||||| Sbjct 200059 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 200000 Query 33114 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT 33170 | | || || ||| ||| |||| ||| || || ||||| ||||| ||| | Sbjct 199999 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 199943 Query 33171 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG-TAAGAAATTCTTGTTCAA 33229 | ||||||| || || | | | || |||| || || |||| | | ||||| Sbjct 199942 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCT-TTCAA 199884 Query 33230 TGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AATA 33286 || || ||| ||| |||| | |||| |||||| || || |||| Sbjct 199883 CTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATA 199824 Query 33287 AATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTT 33346 || || | || | ||| ||||| || | || || |||||||||||||||| Sbjct 199823 AAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTT 199767 Query 33347 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGA 33406 | ||| ||| || ||||| | | | | | ||||||| |||||| || | | || Sbjct 199766 CATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGA 199707 Query 33407 ATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC 33466 | ||| ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 199706 AACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATG 199647 Query 33467 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 | |||| |||||| ||| |||||| || || || || || || || Sbjct 199646 AATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATAT 199587 Query 33527 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33586 |||| || |||| ||| | || ||| || |||||| | |||| | || || | Sbjct 199586 TTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAA 199527 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646 | |||||| |||| ||||| || ||||| | || || |||||| ||| || | Sbjct 199526 GTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTT 199467 Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTAT 33704 |||| || ||||| || || ||| | ||||| || | ||||||||||| ||||| Sbjct 199466 TAGCTTCTGTAATTTGAACCTCTCTTAAAAAT--TTACTGGCCAAATTTTCTAATACTAT 199409 Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTG 33763 || ||||| ||||||||||| || ||||||||||| ||||||| ||||| | || | Sbjct 199408 ACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT- 199350 Query 33764 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 33823 ||| ||| | |||| || | ||| | |||| ||||| |||||| |||||||||||| Sbjct 199349 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATG 199290 Query 33824 ATGCCTCTGCCTTTTTATA 33842 |||| ||||| |||||||| Sbjct 199289 ATGCTTCTGCTTTTTTATA 199271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932295988240