Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq213 113 4e-20 >seq213 Length=18882 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| ||||| || || ||||| | ||||| |||| |||||||| Sbjct 1043 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 984 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | || || || ||| || || ||||| || || |||||||| Sbjct 983 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 924 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATA 26946 ||||||| | || | | || |||||| | || |||| |||| | | | || | |||| Sbjct 923 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAA-CATTATCGGATTATA 865 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||||||| | || | ||| | || | |||||||| Sbjct 864 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 816 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| || || ||||| | |||||| | || |||||||| Sbjct 581 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 522 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 521 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 462 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATA 26946 |||||| | || | || || |||||| | || |||| |||| | | | || | |||| Sbjct 461 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAA-CATTATCGGATTATA 403 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||||||| | || | ||| | || | |||||||| Sbjct 402 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| ||||| ||||| | |||||| | || | || || Sbjct 812 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 753 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 752 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 693 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||||| | || | | || |||||| | ||||||| || ||| | | | || |||| Sbjct 692 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAG-AACATTATCGGATTATA 634 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||| || ||||| ||||| | || | || | || | ||||||||| Sbjct 633 ACATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650948002080