Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq112 165 2e-35 seq37 158 3e-33 >seq112 Length=225903 Score = 165 bits (182), Expect = 2e-35 Identities = 496/762 (65%), Gaps = 8/762 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || || ||||||||| | | ||| | || || | | ||||| ||||| ||| Sbjct 220752 TTTACACATGCAACGCCAACATTATTTAATTCAGGGACACCAAGACCACAAATGTCATCT 220811 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||| | || ||||| | ||||| || || || || ||||| ||| | || | Sbjct 220812 TGTTTTTTGCTGTGTATGAAAGCAGATTCTATTGAAGGAATTTTTGAAACATTAAAACAA 220871 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| | || || | |||||| || ||||||||| | | || || | |||| | Sbjct 220872 TGTGCTTTGATAAGTAAAACTGCAGGTGGTATTGGTGTAGCAGTACAAGATATACGTGGA 220931 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 ||||| || || | || || | || || || || || | || || ||| | | Sbjct 220932 CAGAATTCATATATAAGAGGAACTAATGGTATT-TCAAACGGATTAGTACCAATGTTAAG 220990 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || ||| || |||| || || || || || || ||||||||||| | ||||| | || Sbjct 220991 AGTTTTTAACGATACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATT 221050 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| | ||| | || || ||| | || || ||||| ||||| || | | ||||| Sbjct 221051 TGCAGTATATATTGAACCATGGCATTCAGACATATTTGAATTTCTAGATTTGAGAAAAAA 221110 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 || ||||| ||||| | || | ||| | || ||||| |||||||| | || Sbjct 221111 TCATGGTAAAGAAGAATTAAGAGCTAGAGATTTATTTTATGCTGTTTGGGTTCCAGATTT 221170 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 |||||||| | || ||| | ||| |||||| | | | || ||| | |||||||| Sbjct 221171 ATTTATGAAAAGAGTTAAGGAAAATAAAAATTGGACTTTAATGTGTCCAAATGAATGTCC 221230 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 |||| | || ||||||||| || | || |||| |||||||||||| || Sbjct 221231 AGGTTTGAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATGAAAAGTATGAA---GA 221287 Query 364086 GGGAAAGGCTCGTAAGACAA---TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 | ||| | || | || | || || | |||||||||| || | | Sbjct 221288 AGAAAATTTAGGAAAAAAAACTGTATTAGCTCAAGATTTATGGTTTGCTATTTTACAAAG 221347 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||||||| ||||| ||| || ||||||||||||||||| || || || || || Sbjct 221348 TCAGATTGAAACAGGTGTACCATACATGTTGTACAAAGATTCATGTAATGCTAAATCTAA 221407 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 || | | | ||||||||| | || || ||||| || || || ||||| || Sbjct 221408 TCAAAAAAATTTAGGTACAATTAAATGTAGTAATCTATGCTGTGAAATAATAGAATATAC 221467 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | || || || ||| || |||||| | || || || || Sbjct 221468 ATCACCAGATGAAGTTGCTGTTTGTAACTTAGCATCTATTGC 221509 >seq37 Length=214198 Score = 158 bits (174), Expect = 3e-33 Identities = 422/637 (66%), Gaps = 16/637 (3%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACTTCTG 111371 ||||||| || | ||||| ||| | | ||| ||| |||||| | || ||| | || Sbjct 54627 ATTTTCCCCTATTAACAACCAAGAAATTGT-TTGTAAGAGGAATTATTGAGGAATTACTT 54685 Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTTG 111430 |||||||| | || || |||| |||| | ||| | |||||||| | ||| || Sbjct 54686 TGGTTTATAAGAGGGGAAACCAATGGAAAT-ATTTTGTTAAATAAAAATGTGAGAATATG 54744 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGT--CTTGTCGACAACGAAGAA 111488 ||| | ||||||| | | || ||| ||||| | | | || | || | || | | Sbjct 54745 GGAAGCAAATGGAACTAGAGAATTTTTAGAT--AATAGAAAACTATTTGATAGAGAGGTA 54802 Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548 |||| | || || |||| || ||||||||| | || ||||| || || || | || Sbjct 54803 AATGATTTAGGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACAAAT 54862 Query 111549 ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 ||| | || ||||| | |||| |||||| || | ||| | || || || Sbjct 54863 ATGTATGATAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATATTATAAATTTGATA 54922 Query 111609 AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAA 111668 || || | ||||| | | | |||||| || |||||||||| ||| | |||| Sbjct 54923 AAAAATGAACCAACAAGTAGAAGAATTATTTTGTGTGCATGGAATGTAAAGGATCTGGAT 54982 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 ||||||||| | ||||| |||||| || | ||||| |||||| | ||| |||| | Sbjct 54983 AAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTA 55042 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| |||||||| |||||| |||| | |||||||||||||| || |||||||| Sbjct 55043 TCATGTATCATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCCTTCAATATTGCC 55102 Query 111789 AGTTACGCACT----ACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGA 111844 ||| || | || ||| ||||| ||||| | || | |||| | || Sbjct 55103 TCCTACTCAATTTTCACCTACATGCTT----GCTCAAGTATGTAACTTACAACCTGCAGA 55158 Query 111845 ATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAAC 111904 |||||| |||||| | ||| |||| || | || | || ||||| ||| || |||| Sbjct 55159 ATTCATACACGTTTTAGGAAATGCCCACATATATAACAATCACATAGATAGTCTGAAAAT 55218 Query 111905 ACAGTTGAAGCGCAAACCATACGATTTCCCAACGATT 111941 ||| | || | | || ||| |||||| ||| || Sbjct 55219 TCAGCTAAACAGAATTCCTTACCCTTTCCCCACGCTT 55255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321637696748