Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq213 111 1e-19 seq112 104 2e-17 >seq213 Length=18882 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| ||||| ||||| | || ||| | || || ||| || Sbjct 812 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 753 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 752 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 693 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATA 24168 ||| ||| | || | | || || ||| | ||||||| |||| | | | || |||||| Sbjct 692 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAA-CATTATCGGATTATA 634 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || ||||| ||||| | || ||||||||| |||| ||||||||| Sbjct 633 ACATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 584 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || || |||| || || | Sbjct 1043 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 984 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || || || ||| || || ||||| || || |||||||| Sbjct 983 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 924 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATA 24168 ||| ||| | || | | || || ||| | || |||| |||| | | | || |||||| Sbjct 923 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAA-CATTATCGGATTATA 865 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || ||||||||||| | || ||||| ||| |||| |||||||| Sbjct 864 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 816 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 || ||| |||| ||| | || || ||| | || || || ||| | || || || Sbjct 1246 GGTAAAACGATCACCTTGGATGTTGAGTCATCGGATACGATTGAGAATGTAAAGGCGAAA 1187 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || || ||||| ||||| || ||||| || ||| |||| | | || |||||| Sbjct 1186 ATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCAA 1127 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTA 24197 | ||||||| ||||| | ||||||||||| ||||| |||||||| | |||||| Sbjct 1126 TTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 1067 Query 24198 GTGTTAAGATTGAGAGGAGG 24217 || ||| |||| |||||||| Sbjct 1066 GTCTTACGATTAAGAGGAGG 1047 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || || ||||| | || ||| | || || || | Sbjct 581 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 522 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 521 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 462 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATA 24168 || ||| | || | || || || ||| | || |||| |||| | | | || |||||| Sbjct 461 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAA-CATTATCGGATTATA 403 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 |||| || ||||||||||| | || ||||| ||| |||| |||||||| | |||| Sbjct 402 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAAT 346 >seq112 Length=225903 Score = 104 bits (114), Expect = 2e-17 Identities = 187/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 |||| |||||| ||||||||||| || | || ||||||| ||||| || | | Sbjct 221277 TTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTG 221218 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 ||||||| || | ||| |||| | | | || |||||||| || || || || Sbjct 221217 GACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCC 221158 Query 133128 ACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAG 133186 | | ||| |||||||||| | ||| ||| || ||||| || |||| | |||| Sbjct 221157 AAACAGCATAAAATAAATCTCTAGCTCTTAAT-TCTTCTTTACCATGATTTTTTCTCAAA 221099 Query 133187 TCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTC 133246 || | ||| ||| ||||||| |||||| || || |||||||| || || | ||||| Sbjct 221098 TCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTT 221039 Query 133247 CTTTTACCT---CCCTGATCCACATGTCTA 133273 ||||| ||| || ||||| |||| |||| Sbjct 221038 CTTTTTCCTCCACCTTGATCTACATATCTA 221009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925970936670