Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq213 105 6e-18 >seq213 Length=18882 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | |||||||| ||||| || |||| || || Sbjct 1043 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 984 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 983 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 924 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || ||||||||||| |||| | ||| | | |||||||| Sbjct 923 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 864 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || ||||| |||||| |||| | || || |||| ||||||| Sbjct 863 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 816 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || || ||||| | || ||||| ||||| ||| | || |||||| Sbjct 812 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 753 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 752 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 693 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || |||||||| ||||||| | ||| | | |||||||| Sbjct 692 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAA 633 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| || ||||||||||| | || | ||||| |||| |||||||| Sbjct 632 CATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || || ||||| | || ||||| ||||| ||| | || || || Sbjct 581 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 522 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 521 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 462 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | || || ||||||||||| |||| | ||| | | |||||||| Sbjct 461 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 402 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || ||||| |||||| |||| | || || |||| ||||||| Sbjct 401 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 115370 AAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAA 115429 |||||| ||||| ||||| | || ||||||||||||| | || | |||||| || Sbjct 1189 AAAATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAG 1130 Query 115430 CAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACAT 115489 ||||| ||||||| || ||| | ||||||||||| ||||| || ||||| ||||| Sbjct 1129 CAATTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACAT 1070 Query 115490 ATGGTGTTGAGATTGCGAGGAGG 115512 | || || |||| ||||||| Sbjct 1069 TTAGTCTTACGATTAAGAGGAGG 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425334078053680