Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq112 374 1e-98 seq139 196 6e-45 >seq112 Length=225903 Score = 374 bits (414), Expect = 1e-98 Identities = 1007/1533 (66%), Gaps = 29/1533 (2%) Strand=Plus/Minus Query 62169 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62228 || |||| | ||| ||||| || || ||||||||| | |||||| | ||||| Sbjct 222096 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAAA 222037 Query 62229 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62288 |||| || || || ||||| | ||| ||||| ||||| || ||||| | ||| ||||||| Sbjct 222036 TATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAG 221977 Query 62289 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62348 | ||||||||||| | | ||| ||| || || || | | || | ||||| ||||| | Sbjct 221976 TAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTAA 221917 Query 62349 GAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNNNTT------GT 62401 | | ||||||||| | | || |||| | | Sbjct 221916 GTTCATTCCAATTCCAGTATTT----GTTATCAACTTTGATATTCCACATATCAAACTGA 221861 Query 62402 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 62460 |||||||| | || || | || | ||| |||| | || ||| || | | | ||| Sbjct 221860 AGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAGC 221802 Query 62461 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 62520 || ||| | | ||||||||| | || || || ||||| || || | ||||||| Sbjct 221801 TAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAA 221742 Query 62521 ATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 62580 |||| ||||| || | ||||| |||| || ||||| | ||| |||||||| Sbjct 221741 TTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCC 221682 Query 62581 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62640 ||| |||||||| || || |||||||||||| | || || | |||||||| || ||| Sbjct 221681 TTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAGG 221622 Query 62641 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62700 ||||||||| | || |||||||| | | |||||| ||| | ||| | || | Sbjct 221621 ATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATA 221562 Query 62701 CAGTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAATGCAACAGA 62754 | ||| ||||| ||| | ||| | |||||| | || |||| ||| Sbjct 221561 TAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAGA 221502 Query 62755 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 62814 ||| | |||||||| || || |||| | | ||||| |||||| ||| ||| || Sbjct 221501 TGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATAG 221442 Query 62815 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 62874 ||||||||| || || || |||||||||| ||||||| || ||||| | ||| || Sbjct 221441 ATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTT 221382 Query 62875 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 62934 || | ||| |||| ||| |||||||||||| || || ||| || ||| | | Sbjct 221381 GTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAATC 221322 Query 62935 TCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCG 62991 | |||| || || || ||| | || |||||| ||| || | ||| ||| Sbjct 221321 TTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATTT 221265 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || || || ||||| | || || |||||||||| |||||||| || | Sbjct 221264 TTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAGT 221205 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| | | | ||||| |||| ||||||||| | ||| |||| ||||| ||| ||| Sbjct 221204 CCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAAA 221145 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || |||||| | ||| ||| || || || ||| ||| | | ||| || || | | Sbjct 221144 TAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAAA 221085 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || |||||||| ||||| | |||| || | ||| | ||| ||| || Sbjct 221084 TATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACC 221025 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGG 63290 ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || | Sbjct 221024 TTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTG 220966 Query 63291 ATGTACCATTGGTCCCTGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAGA 63349 | ||||||| || ||| ||||| | | | | |||| |||| | || || | Sbjct 220965 AAATACCATTAGTTCCTCTTATATATGAATTCTGT-CCACGTATATCTTGTACTGCTACA 220907 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || ||||| ||||| || || || ||| ||||||| || ||| | || || Sbjct 220906 CCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCCT 220847 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || ||| ||| | |||| || | |||||| |||||||| | | || Sbjct 220846 TCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGTC 220787 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || | ||||||||| || || | || || ||||| |||||| || | |||| || Sbjct 220786 CCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATAG 220727 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 || || | ||| |||| ||| | ||| || || | || || | ||| | || Sbjct 220726 GTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAAA 220667 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 ||||| |||||||| | ||| || || || || || || || ||| |||| || ||| Sbjct 220666 TGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGTT 220607 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63682 ||||||||||| || | ||| ||| || ||| Sbjct 220606 TTAAAACCAAAGTAATCGTAGTTAAAATCACGT 220574 >seq139 Length=234430 Score = 196 bits (216), Expect = 6e-45 Identities = 587/890 (66%), Gaps = 22/890 (2%) Strand=Plus/Minus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 200119 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 200060 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 |||| || || || ||||| ||| || ||||| | || | |||||||| Sbjct 200059 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 200000 Query 32471 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 | | || || ||| ||| |||| |||||| |||||||| ||||| ||| | Sbjct 199999 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 199943 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCA 32585 | ||||||| || || | | | || |||| |||| || |||| | | |||| Sbjct 199942 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACA-TATGAAAGACCT-TTCA 199885 Query 32586 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AAT 32642 | || || ||| ||| |||| | | || |||||| || || ||| Sbjct 199884 ACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAAT 199825 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 ||| || | || | ||| ||||| |||| || || ||||||||||||| | Sbjct 199824 AAAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 199768 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGC 32761 || ||| ||| || ||||| | | | | | ||||||| |||||| || | || Sbjct 199767 TCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAG 199708 Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 ||| | ||| ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 199707 AAACTA-CCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA 199649 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | |||| |||||| ||| |||||| || || || || || || || Sbjct 199648 TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTAT 199589 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 | || ||||||| ||| | || ||| || |||||| | ||| | || || Sbjct 199588 ATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTAT 199529 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 | | |||||| |||| ||||| || ||||| | || ||||||||| ||| || Sbjct 199528 AAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTT 199469 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTG-CTAAATTTTCATTCACTA 33060 | |||| || ||||| || || ||| | ||||| | ||| | |||||||| |||| Sbjct 199468 TTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATT-TACTGGCCAAATTTTCTAATACTA 199410 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT 33119 | || ||||| ||||||||||| || ||||||||||| ||||||| ||||| | || | Sbjct 199409 TACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT 199350 Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 ||| ||| | |||| || | ||| | |||| ||| | |||||| ||||||||||| Sbjct 199349 -TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAAT 199291 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 33229 ||||| ||||| |||||||| | || ||| | || ||||| |||||| Sbjct 199290 GATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGG 199241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616840354400