Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq213 118 9e-22 >seq213 Length=18882 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| || || ||||| || || ||||||| |||| || || || || Sbjct 1043 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 984 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| | ||| | |||| ||| || || ||||| |||||||| || | Sbjct 983 AGACACCATTGAGAATGTAAAGGCGAAAATTCAA-GATAAGGAAGGAATTCCACCCGATC 925 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || ||||||||||| |||| | || | ||||| | Sbjct 924 AACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATA 865 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || |||||||| || |||| ||||| || | |||||||||| Sbjct 864 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 816 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || || || || || || || ||||||| | || || ||||| || Sbjct 812 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 753 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| | ||| | |||| ||| || || ||||| |||||||| || | Sbjct 752 GGATACGATTGAGAATGTAAAGGCGAAAATTCAA-GATAAGGAAGGAATTCCACCCGATC 694 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || |||||||| ||||||| | || | ||||| | Sbjct 693 AACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATA 634 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || || ||||| || || || || |||||| || | ||||||||||| Sbjct 633 ACATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 584 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || || || ||||| || || ||||||| | || || || || || Sbjct 581 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 522 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| | ||| | |||| ||| || || ||||| |||||||| || | Sbjct 521 GGATACTATTGAGAATGTAAAGGCGAAAATTCAA-GATAAGGAAGGAATTCCACCCGATC 463 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || || || || ||||||||||| |||| | || | ||||| | Sbjct 462 AGCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATA 403 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || |||||||| || |||| ||||| || | |||||||||| Sbjct 402 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317891811910