Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq139 246 3e-60 >seq139 Length=234430 Score = 246 bits (272), Expect = 3e-60 Identities = 593/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||| || || || |||| ||||||||| || ||||| ||||||| Sbjct 200113 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 200054 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| || ||| || | | | | ||||| || || | || | |||| | | | Sbjct 200053 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAA-ATTTTTGAACAAC 199995 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | ||||||| ||| ||||||||||| || ||||||||||| || ||| Sbjct 199994 CTAAACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAAT 199935 Query 92967 TCATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 |||| || | ||| | | |||||||| || | |||| | || | | |||| Sbjct 199934 TCATCCCAATTAAGTCACA-AGGTAGAGATTCACATATGAAAGACCTTTCAACTTCAACA 199876 Query 93026 GCTTCTTT--CAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGT 93083 |||||||| ||| |||| || | || || | |||| |||| | | | | || | | Sbjct 199875 GCTTCTTTTACAATATTTTTAACAA-CTTCT-TCTGGTAGTTTATTTTCTAATAAACTAT 199818 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | |||| || ||| || |||||||| ||||| |||| || | |||||||| | Sbjct 199817 ATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAA 199758 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | || | || |||| | |||| || | |||||| || | | ||||||||| Sbjct 199757 AGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCAC 199698 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGG 93260 ||| | ||||||||| || |||| ||| ||||| | ||| ||||| ||||| Sbjct 199697 TAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTAT 199638 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 ||| ||||||||| |||||| ||||| ||||||| |||| ||| Sbjct 199637 CATTT------ATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTT 199584 Query 93321 CGATAGCGTTAAATAGGTAATCT---CGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | ||||| | ||||| ||| | || || | |||| ||| || | || || | Sbjct 199583 CAATAGCATGAAATA---AATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAA 199527 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 | | ||| |||| ||||| | ||| |||| ||| ||||| ||| ||| || | Sbjct 199526 GTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTT 199467 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||||||| || || || || ||| ||||| | | | |||||| ||||||| Sbjct 199466 TAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATAC 199407 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 |||| ||||||||||| || |||| ||| || |||||||| || |||| || || | Sbjct 199406 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTA 199347 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || || |||| || ||| |||| | ||| | |||||| | |||||||| |||| Sbjct 199346 ATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATG 199287 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGG 93663 ||||||||||||| || | |||||| | || ||||| |||||| Sbjct 199286 CTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGG 199241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847477105360