Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq213 141 8e-29 >seq213 Length=18882 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || || || |||| || || || ||| | | Sbjct 1042 ATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATCA 983 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||||||||| ||||| || ||||||||||||||| Sbjct 982 GACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 923 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | |||||||| || ||||| ||||||||| | || | || ||||| ||| Sbjct 922 CAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 863 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || |||| ||||| || ||||| | |||||| Sbjct 862 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 815 Score = 132 bits (146), Expect = 4e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || || || || || |||| | || || ||| | | Sbjct 580 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 521 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || |||||||||||||| Sbjct 520 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 461 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | ||||| || || ||||| ||||||||| | || | || ||||| ||| Sbjct 460 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 401 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTT 22456 || || |||||||| || |||| ||||| || ||||| | ||||||||| ||||| Sbjct 400 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAATTTT 343 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| ||||| || || || |||| | || || || || | Sbjct 811 ATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTCG 752 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || ||||||||||||||| Sbjct 751 GATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 692 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | |||||||| || ||||| || || ||| | || | || ||||| ||| Sbjct 691 CAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAAC 632 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || ||| | || ||||| || ||||| | ||||| Sbjct 631 ATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGG 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718209057410