Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq213 127 5e-24 >seq213 Length=18882 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| || |||||||||||||||||||| Sbjct 389 TTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAA 448 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 449 TATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 508 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| |||||||| || | ||||| ||||| || |||| || || || Sbjct 509 CTCAATAGTATCCGATGATTCTACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCAC 568 Query 288462 GAATATCTGCATT 288474 ||||||||||||| Sbjct 569 GAATATCTGCATT 581 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| || ||||||||||||||||| || Sbjct 851 TTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAA 910 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| ||| |||||||| ||||| || |||||||| || || || Sbjct 911 TATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 970 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || |||||||| ||||||||||| ||||| || |||| || || || Sbjct 971 CTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCAC 1030 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 1031 AAATATCTGCATT 1043 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| || | | || | ||| ||||| |||||||||||||| || Sbjct 621 TCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAAT 680 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| ||| |||||||| ||||| || |||||||| || || || Sbjct 681 ATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTC 740 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || | ||||| ||||| || || | || || ||| Sbjct 741 TCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACG 800 Query 288463 AATATCTGCATT 288474 |||||||||||| Sbjct 801 AATATCTGCATT 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625471187692