Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq213 136 3e-27 seq100 84.2 2e-11 >seq213 Length=18882 Score = 136 bits (150), Expect = 3e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || | ||||| ||||| || ||||| ||||| | Sbjct 354 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCC--G 411 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || ||||||||||| || ||| |||| || | || || ||| || Sbjct 412 ATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTG 471 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 ||||||||||||| || |||||| |||||| | || |||||||| | || |||| Sbjct 472 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATC-CGATGATTCT 530 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| ||||| || ||||||| ||||| || || || ||||| Sbjct 531 ACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCAT 580 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || |||||||| ||||| || ||||| ||||| | Sbjct 585 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCC--G 642 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||| |||||||| || || |||| || | ||||| ||| || Sbjct 643 ATAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTG 702 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || |||||| |||||| | || || ||||| || | Sbjct 703 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAA 762 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || ||||| | ||||| || || || ||||| Sbjct 763 CATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCAT 811 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || | ||||| ||||| || ||||| ||||| | Sbjct 816 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCC--G 873 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || ||||||||||| || || |||| || | ||||| ||| || Sbjct 874 ATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTG 933 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || |||||| |||||| | || || || || ||||| Sbjct 934 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTA 993 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||| || || |||| ||||| ||||| || ||||| Sbjct 994 CATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 1042 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| |||||||| | |||||| || ||||| ||||| ||||| Sbjct 1047 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAAT 1106 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||| ||||| || || || ||||||| | || || || ||| Sbjct 1107 AATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGGT 1166 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||||||||| || |||||| |||||| | || || ||||| | || || || Sbjct 1167 ATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATC-CGATGACTCAAC 1225 Query 15129 GTCTAAGGTAATGGTTTTACCT 15150 || ||||| || ||||||||| Sbjct 1226 ATCCAAGGTGATCGTTTTACCT 1247 >seq100 Length=495214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036 || || || ||||| || || |||||||| | | | || | | |||||||||||| Sbjct 295298 AGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 295239 Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || || | || || | |||| |||| |||||| ||||||| || |||||| | Sbjct 295238 CCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 295179 Query 15097 TTTACAATTTCTATAGTATCGCTATT--TTCTACGTCTAAGGTAATGGTTTTACCTGTCA 15154 || | | |||| || |||| ||| | ||| || || | || ||| ||||| || | | Sbjct 295178 TTAATATTTTCAATTGTAT--CTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTA 295121 Query 15155 GAGTTTTTACAAAAATTTGCATATTTG 15181 |||||||| || |||||||| |||| Sbjct 295120 ATGTTTTTACGAATATTTGCATTTTTG 295094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383663161490