Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq213 104 2e-17 seq100 87.8 2e-12 >seq213 Length=18882 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 ||||||| ||||| || || || || ||||| |||||||| | ||| | ||| Sbjct 600 AACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCT 659 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||||||||||||||| |||| |||| ||| || || || ||||| ||||| |||||| Sbjct 660 TCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCT 719 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||||| || | || | || || || ||||| || || | || | || Sbjct 720 TGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTC 779 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||| || || || ||||| Sbjct 780 TTTCCTGTTAAGGTTTTCACGAATATCTGCAT 811 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| || ||||| |||||||| | ||| | ||| || |||||||||||| Sbjct 846 GTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCT 905 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| ||| || || || ||||| ||||| |||||||||||||| || Sbjct 906 GCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTT 965 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | |||||| || || || || ||||| || | || || || || | ||| Sbjct 966 ACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTTTCCCGTCAAGGTT 1025 Query 45324 TTTACAAAAATTTGCAT 45340 || ||||| || ||||| Sbjct 1026 TTCACAAATATCTGCAT 1042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| || ||||| |||||||| | ||| | ||| || |||||||||||| Sbjct 384 GTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCT 443 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| |||| |||| |||||| || || ||||| ||||| |||||||||||||| Sbjct 444 GCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTT 496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || |||||||||||||| |||||||| | ||| | ||| Sbjct 1062 AAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAATAATGTTCTGCCATCT 1121 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||||||| ||||| || ||||||||| |||||| || || || || ||||| ||||| Sbjct 1122 TCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGGTATTCCTTCCTTATCC 1181 Query 45249 TGAATTTT 45256 |||||||| Sbjct 1182 TGAATTTT 1189 >seq100 Length=495214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 45140 CAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTT 45199 ||| || ||||| || |||||||| ||||| | | ||||| | || |||||||| Sbjct 295299 CAGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTT 295240 Query 45200 TCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 45259 ||| || | || |||| ||| | ||| | ||||| |||| ||||| ||||||||| Sbjct 295239 TCCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGC 295180 Query 45260 TTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||| || ||| | || || || || || || || | || ||||| || ||| Sbjct 295179 TTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 295120 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 |||||||| || |||||||| Sbjct 295119 TGTTTTTACGAATATTTGCAT 295099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992385823440