Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq112 168 8e-37 >seq112 Length=225903 Score = 168 bits (186), Expect = 8e-37 Identities = 850/1345 (63%), Gaps = 26/1345 (2%) Strand=Plus/Plus Query 111896 TATTAGAGGTACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACG 111954 ||| ||||| || |||||| ||| | || |||| | |||||| | | || ||||||| Sbjct 220943 TATAAGAGGAACTAATGGTATTTCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACG 221001 Query 111955 CCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATC 112011 ||||| | |||||| | |||| ||| | | || ||||| | ||||| ||| Sbjct 221002 ATACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATA 221061 Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071 |||| |||||||| | || || | || || || || ||| | || || ||| | | Sbjct 221062 TTGAACCATGGCATTCAGACATATTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAG 221121 Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 | || | | ||| | || | ||| | ||| |||||||| | || ||||| | Sbjct 221122 AAGAATTAAGAGCTAGAGATTTATTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAA 221181 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 ||||| |||| | | |||||| || | | |||||| | | || ||| | | Sbjct 221182 GAGTTAAGGAAAATAAAAATTGGACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTG 221241 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | | |||||| || |||||| | || |||||| || ||||||| | | | Sbjct 221242 AAACATGGGGTGAAGAATTTGAAAAATTATATGAAAAGTATGAAGAAGAAAATTTAGGAA 221301 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 || || |||| ||| | ||| |||||| | | ||| | || || | Sbjct 221302 AAAAAACTGTATTAGCTCAAGATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAG 221361 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 || |||||| ||| | |||||||| | ||||| || ||||||||| ||||| | Sbjct 221362 GTGTACCATACATGTTGTACAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAG 221421 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 || || || || || || || ||||| | |||| |||| |||||| Sbjct 221422 GTACAATTAAATGTAGTAATCTATGCTGTGAAATAATAGAATATACATCACCAGATGAAG 221481 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| |||||| | ||||| || ||| | || | ||| || |||| | ||| Sbjct 221482 TTGCTGTTTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGACACAGAAAAAAAAG 221541 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 ||| ||| | ||||| | | ||| |||| |||| | | || | ||| || ||| | Sbjct 221542 TTTTTAATTTTAAAAAATTATATGAAATTACAAAAATTATTACGAGAAATTTAGACAAAA 221601 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 ||||||| ||||||| ||| || ||| || ||| | ||| || | |||||| | | Sbjct 221602 TTATTGAAAGAAATTATTATCCTGTTAAGGAAGCTGAGAGATCAAACAGGAGACATAGAC 221661 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 |||| || | ||||| ||||| | || || ||| || |||| | | | | | Sbjct 221662 CAATAGGAATTGGTGTACAAGGATTAGCTGACACATTTATGCTTTTAAGATATCCTTACG 221721 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || ||||| || ||| | ||| | || ||||| || ||||| | || || Sbjct 221722 AATCAGATGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTACTATGCTGCAT 221781 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | || | | ||| || || | || |||| ||||||| | | ||| ||| || Sbjct 221782 TAGAAATGTCTATGGAATTAGCTAAAATTTATGGGAAATATGAATCTTATGAAGGTAGTC 221841 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG------GAAGGTGAGACCAAGCTTC 112845 ||||| ||||| | ||||| |||||||||||| ||| ||| | ||| Sbjct 221842 CAGCTAGCCAAGGTATTCTTCAGTTTGATATGTGGAATATCAAAGTTGATAACAA---AT 221898 Query 112846 ACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT 112905 ||| | ||| | | || || ||| || || | | || || | | | || || Sbjct 221899 ACTGGAATTGGAATGAACTTAAAGAAAAAATTAAAAAACATGGACTAAGGA--ATTCCTT 221956 Query 112906 --TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 | | ||||| ||||| || || || || ||||||| || || || ||||||| || Sbjct 221957 ACTTTTAGCACCTATGCCTACTGCATCTACTTCACAAATATTAGGAAACAATGAATCTTT 222016 Query 112964 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 113023 |||||| ||||| | || || || |||||| ||| ||||| || | |||| Sbjct 222017 TGAACCATACACTAGCAATATTTACTACAGAAGAGTACTCAGTGGAGAATTCTTCGTTGT 222076 Query 113024 CAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA---A 113080 ||| ||| | | | ||| | || ||| |||||| | || |||| | Sbjct 222077 CAATCCTCATTTACTTAAAGACTTATTCGATCGTGGACTCTGGGATGAAGACATGAAACA 222136 Query 113081 GGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCC-AGATGAAA 113139 | || || | | ||| || |||| |||| || || || ||| || Sbjct 222137 ACAACTTATTGCTCACAATGGTAGT---GTTCAGTATATCAGTGAAATACCTAGA-GACC 222192 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 113199 ||||| | | ||| || ||||||||||||||| ||| | |||| || ||||||| Sbjct 222193 TTAAGGAACTATACAAAACCGTTTGGGAAATCAAGCAAAAGAACATCATCGATATGGCCG 222252 Query 113200 CAGATCGTGGTCGCTTCATTGATCA 113224 | ||||||||| ||||||||||| Sbjct 222253 CTGATCGTGGTGCTTTCATTGATCA 222277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727548738080