Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq112 95.1 1e-14 >seq112 Length=225903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 352/544 (65%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 ||||||| | || ||||| ||| |||||| || || || | ||||| ||| Sbjct 222079 TTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAAATATTGCTAGTGTATGGT 222020 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 ||||| ||||||| || || || ||||||| || || || || ||||| ||||| | Sbjct 222019 TCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCATAGGTGCTAAA 221960 Query 106016 A--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 106073 | || || | | | || || | || || || ||| || || ||| ||| | Sbjct 221959 AGTAAGGAAT--TCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATTCCAATTCC 221902 Query 106074 AGTTGAGCTTGGTTTCACCTTC------CCACATATCAAATTGAAGCACCCCTTGGGACG 106127 ||| ||| | ||| ||| |||||||||||| ||||| | |||||| | Sbjct 221901 AGTAT---TTGTTATCAACTTTGATATTCCACATATCAAACTGAAGAATACCTTGGCTAG 221845 Query 106128 TGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCC 106186 ||| ||| ||| | | ||||| || | || ||| ||||| | || | Sbjct 221844 CTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATTCCATAGA-CATT 221786 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 || | | || | ||||| |||||||| || | ||| | || || ||||||||| Sbjct 221785 TCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTCATCT 221726 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 || || | | || | | | |||||| || || | ||||| ||||| | || Sbjct 221725 GATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCCTTGTACACCAATTCCT 221666 Query 106307 ATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365 || ||||| |||| | | || || || || || || ||| |||||| ||||||| || Sbjct 221665 ATTGGTCTATGTCTCCTGTTTGATCTCTC-AGCTTCCTTAACAGGATAATAATTTCTTTC 221607 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 106425 ||| | | || || |||| | |||| ||| ||||| ||||||| | ||||| | ||| Sbjct 221606 AATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATATAATTTTTTAAAATT 221547 Query 106426 AAAA 106429 |||| Sbjct 221546 AAAA 221543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966684709360