Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq213 132 1e-25 seq100 102 2e-16 >seq213 Length=18882 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| ||||| Sbjct 369 AAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCC 428 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || || |||||||| || | || ||| || || || ||||| ||||| || ||| Sbjct 429 TCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCT 488 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || |||||||| || ||||| ||| || || | ||| | ||| Sbjct 489 TGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTACATCTAAGGTGATGGTC 548 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| ||||| | |||||| Sbjct 549 TTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| || || |||||||| || || || ||||| | | ||||| |||||| Sbjct 600 AACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCT 659 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || || ||||| || || | || |||||| || || ||||| ||||| || ||| Sbjct 660 TCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCT 719 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || |||||||| || ||||| || || || | ||| | ||| Sbjct 720 TGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTC 779 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || ||||| ||||| | |||||| Sbjct 780 TTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| ||||| Sbjct 831 AAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCC 890 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || || ||||| || || | || |||||| || || ||||| ||||| || ||| Sbjct 891 TCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCT 950 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || |||||||||||||| || ||| || || || || | ||| Sbjct 951 TGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTC 1010 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| ||||| ||||| || || | |||||| Sbjct 1011 TTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 >seq100 Length=495214 Score = 102 bits (112), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 |||||||| ||||| || ||||||||||| | |||| | ||| ||| | || || Sbjct 295298 AGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 295239 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || || || | || ||||| ||| | ||||| |||| || || ||||||||| Sbjct 295238 CCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 295179 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT--TTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || | || ||||| || || ||| ||| || ||||||| || || ||||| | | Sbjct 295178 TTAATATTTTCAATTGTATCT--ACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTA 295121 Query 195119 AAGTTTTTACGAACACTTGCATTTATG 195145 | ||||||||||| | |||||||| || Sbjct 295120 ATGTTTTTACGAATATTTGCATTTTTG 295094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109454392044038