Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq139 212 7e-50 >seq139 Length=234430 Score = 212 bits (234), Expect = 7e-50 Identities = 558/838 (67%), Gaps = 29/838 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||| ||||| || |||| ||| |||| ||||| ||||| ||||||| Sbjct 200113 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 200054 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGT---ACTACA 36988 ||| || || ||||| ||| ||| ||||| || | | | || | || || Sbjct 200053 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACC 199994 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| || |||||||| || || | | |||||| | | Sbjct 199993 TAAACATTC--TAATAATCG-ATCTGCTACAAATTCAATATACTGAGACATTAATCTTGA 199937 Query 37049 GTTTATACCAATTA-GTTTTACTG--GAATTGCATCTTGAAGAAATAGTTTTTCTATTAT 37105 || || ||||||| || | | || | || | | |||| | ||| | | | Sbjct 199936 ATTCATCCCAATTAAGTCACAAGGTAGAGATTCACAT--ATGAAAGACCTTT-CAACTTC 199880 Query 37106 TACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTT 37165 ||||| ||||| || ||||| || ||||||||| | | | || || ||| | | Sbjct 199879 AACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACT 199820 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 | | | || ||| |||||| |||||| |||||||||||||| || | |||||| Sbjct 199819 ATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCT 199760 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 |||||| | ||| | | | | |||||||| |||||| || || ||| || Sbjct 199759 AAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACC 199700 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 | ||| | ||||||||||| |||| |||||||| | | | || |||| | Sbjct 199699 ACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAATT 199643 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACATTCAATTGTTT 37404 |||| ||||||||| || |||| ||| |||| | ||||| | || ||| Sbjct 199642 TGTATCATTTATCCATTTTGCTGCCCAAAGTGC-TTTATTCTTAACTGCTGGTATATTTT 199584 Query 37405 CAATTGCTTTTAAGAGA---AAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 |||| || | || | | || || || |||| ||| |||||||| | || || | Sbjct 199583 CAATAGCATGAAATAAATTTAAACGTTCTTTTTCA---TCTTTTATATAATTGTCTATAA 199527 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 |||||||||| |||| || || |||||||| | ||||| ||||| ||||| Sbjct 199526 GTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTT 199467 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||||| | | |||||| || | ||||| | | || || ||||| ||||| | Sbjct 199466 TAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATAC 199407 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATTTG 37638 |||||||||||||||| || || | |||| ||| |||||||| ||||| ||||| Sbjct 199406 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATT-- 199349 Query 37639 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| |||| || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 199348 -TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 199292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592302628820560