Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq149 91.5 2e-13 >seq149 Length=246685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 230/338 (68%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 47773 ACAGAATATTGATTTCCTGTG-GCA-ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCA 47830 ||||||| ||| ||| | || ||| || |||| ||| ||||| | ||||| | || Sbjct 70789 ACAGAATGTTG--TTCATTTGAGCATATGACAAGATCTATGGGTTCATTCTGTTGTAACA 70846 Query 47831 TTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGAT 47890 |||| |||| || | ||||||||| | |||||||||||||| | | | ||||| || Sbjct 70847 TTAAGTACATTGCTTGTACATAATCTTTTGCATGTCCCCAGTCTCTATAAGTATCAATAT 70906 Query 47891 TTCCTAGATATA-AACAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT-GCTCTTGTAAT 47948 | || || || |||| ||| || || | | | || || ||| || || || || Sbjct 70907 TACCAAGGGTTAGAACA-CATTGTGTATGTTTACATA-TGTTTGCAATAGCCCTAGTTAT 70964 Query 47949 CTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACT 48008 ||| || || || |||||||| | ||||||| |||||| ||||| | ||| ||| | Sbjct 70965 CTTTTTGGTAACGAAGGTTTCACCTCTTCTTGGACTTTCATGGTTAAATAAAATGCCATT 71024 Query 48009 ACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTT 48068 | | |||| ||||||||| | ||| || | ||| | | |||| ||||| Sbjct 71025 AACACAAAACATATTGTATGATTCTCTATAATTTATGGTTATGTAATGTGCATATAGTTT 71084 Query 48069 TGCAACACCATAAGGAGA-ACGTGGATAGAAAGGTGTG 48105 |||| |||| ||||| || ||| | ||||| ||| Sbjct 71085 AGCAATTGCATATGGAGATACAGGGA-AAAAAGGAGTG 71121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665478478046480