Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq112 140 4e-28 >seq112 Length=225903 Score = 140 bits (154), Expect = 4e-28 Identities = 718/1137 (63%), Gaps = 20/1137 (2%) Strand=Plus/Plus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || |||||| ||| | || |||| | |||||| | | || ||||||| ||||| Sbjct 220950 GGAACTAATGGTATTTCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACGATACAGC 221008 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618 | |||||| |||||| || | | || || || | || || || | ||||| Sbjct 221009 TAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACC 221068 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||||| | || || | || || || || || || || || ||| | ||||| Sbjct 221069 ATGGCATTCAGACATATTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATT 221128 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | ||||||| | |||| | | ||| ||||||| | || ||||| | ||| | Sbjct 221129 AAGAGCTAGAGATTTATTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAAGAGTTAA 221188 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 ||| | | ||| || | | |||||| | | |||||| | || | Sbjct 221189 GGAAAATAAAAATTGGACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTGAAACATG 221248 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858 |||||| || |||||| | || |||||||||||| || | || || || Sbjct 221249 GGGTGAAGAATTTGAAAAATTATATGAAAAGTATGAAGAAGAAAATTTAGGAAAAAAAAC 221308 Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 |||| ||| ||| | ||| |||||| | || |||| || || || ||| Sbjct 221309 TGTATTAGCTCAAGATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAGGTGTACC 221368 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 ||| ||| | ||||| ||| | ||||| || ||| ||||| ||||| || ||||| Sbjct 221369 ATACATGTTGTACAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAGGTACAAT 221428 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 || | ||||| ||| ||||| |||| || ||| ||||| ||||| Sbjct 221429 TAAATGTAGTAATCTATGCTGTGAAATAATAGAATATACATCACCAGATGAAGTTGCTGT 221488 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 ||| || || ||||| || || | || | ||| | ||| | |||| | Sbjct 221489 TTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGACACAGAAAAAAAAGTTTTTAA 221548 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || | ||||| | ||||||| ||||| ||| |||| | |||| || || | | ||||| Sbjct 221549 TTTTAAAAAATTATATGAAATTACAAAAATTATTACGAGAAATTTAGACAAAATTATTGA 221608 Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGACCTATTG 76217 ||||||| |||||| ||| || || || || || || | | |||| ||||| || | Sbjct 221609 AAGAAATTATTATCCTGTTAAGGAAGCT-GAGAGATCAAACAGGAGACATAGACCAATAG 221667 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277 | | ||||| ||||| | || || |||||| | | | || | | || |||| Sbjct 221668 GAATTGGTGTACAAGGATTAGCTGACACATTTATGCTTTTAAGATATCCTTACGAATCAG 221727 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 ||||||| || || | ||| | || |||||||| ||||| | || | | || Sbjct 221728 ATGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTACTATGCTGCATTAGAAA 221787 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 | | ||||| ||| || | || ||||| | | ||| ||| ||| || Sbjct 221788 TGTCTATGGAATTAGCTAAAATTTATGGGAAATATGAATCTTATGAAGGTAGTCCAGCTA 221847 Query 76398 CCCAAGGGGTGCTTCAGTTTGATATGTGG------GAAGGTGAAACCAAGCTCAACTACG 76451 |||||| | |||||||||||||||||| ||| ||| | ||| ||| Sbjct 221848 GCCAAGGTATTCTTCAGTTTGATATGTGGAATATCAAAGTTGATAACAA---ATACTGGA 221904 Query 76452 ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGAT 76509 | ||| ||| || || ||| || || | | || || | | | || || | | Sbjct 221905 ATTGGAATGAACTTAAAGAAAAAATTAAAAAACATGGACTAAGGA--ATTCCTTACTTTT 221962 Query 76510 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 76569 ||||| ||||| || || || || ||||||| || || || ||||||| |||||||| Sbjct 221963 AGCACCTATGCCTACTGCATCTACTTCACAAATATTAGGAAACAATGAATCTTTTGAACC 222022 Query 76570 ATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 |||||| | || || ||| |||||| ||| || || || || ||||||| Sbjct 222023 ATACACTAGCAATATTTACTACAGAAGAGTACTCAGTGGAGAATTCTTCGTTGTCAA 222079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555327072320