Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq213 163 5e-35 seq100 122 2e-22 >seq213 Length=18882 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| | || | |||| |||| |||||| || ||||| || ||| Sbjct 585 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 644 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || ||||||||||| ||||| |||||||| |||||||| || || Sbjct 645 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 704 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| ||||| | |||| ||| ||| ||||| || |||||||| Sbjct 705 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 764 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || || || ||||||| ||||| || ||||| |||||| Sbjct 765 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 154 bits (170), Expect = 3e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 || ||| | ||| ||||| ||||| | || | || || |||| ||||| || || Sbjct 344 AAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTT 403 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| ||||| ||| |||||||||||||| || || |||||||| || || Sbjct 404 ATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTG 463 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| |||||||| ||||| | |||| ||| ||||||||| || Sbjct 464 ATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGA 523 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || |||| || || || || ||||| | ||||| || ||||| |||||| Sbjct 524 TGATTCTACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| ||||| | || | || || |||| ||||| || ||||| || || Sbjct 815 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 874 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| ||||| ||| |||||||||||||| ||||| |||||||| |||||||| || || Sbjct 875 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 934 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| |||||||| ||||| | |||| ||| ||| || || || || || || Sbjct 935 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 994 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || | ||||| |||||||| |||||| Sbjct 995 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 Score = 131 bits (144), Expect = 3e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| ||||| | || | ||| || |||| || || || ||||| || | Sbjct 1046 ACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 1105 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| ||||| ||| || ||||| ||||| ||||| || ||||| || |||||||| || Sbjct 1106 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 1165 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||| ||||| || ||||| | |||| ||| ||| ||||| || |||||||| Sbjct 1166 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAAC 1225 Query 193313 TTCTAGAGTTATAGTTTTACCT 193334 || | || || ||||||||| Sbjct 1226 ATCCAAGGTGATCGTTTTACCT 1247 >seq100 Length=495214 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||||||||||||| |||||||||||||| |||| || | || ||| |||| ||||| Sbjct 295250 TCTAATTGTTTTCCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCC 295191 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | ||| |||||| ||| ||||| || ||||| || || | || ||| Sbjct 295190 TGAATTTTTGCTTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTT 295131 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||| |||||||| |||||||||||||| Sbjct 295130 TTTCCCCTTAATGTTTTTACGAATATTTGCATTTT 295096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899632875768480