Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq139 257 2e-63 seq213 127 3e-24 >seq139 Length=234430 Score = 257 bits (284), Expect = 2e-63 Identities = 563/828 (68%), Gaps = 30/828 (4%) Strand=Plus/Minus Query 17884 TTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATT 17943 ||| || || || ||||| ||||||| | || ||||||| ||| ||| ||| ||||| Sbjct 200080 TTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATT 200021 Query 17944 AGTGGTTTT----ATAATATTTTTCTTGTAT-TAATTCGTATAATAATCTATCTGCTACA 17998 |||| | || |||||| | ||| | |||||||| |||||||||| Sbjct 200020 -----TTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAATAATCGATCTGCTACA 199966 Query 17999 AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTA-GTCTGAAAGGTAGAGC 18057 ||||| | ||| || ||||| || ||||||| || | || ||| || ||||||| Sbjct 199965 AATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAA-GGTAGAGA 199907 Query 18058 ATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAG 18116 ||| ||| ||| | || || | ||||||| ||||||| || ||| | || Sbjct 199906 TTCACATATGAAAGACCTT-TCAACTTCAACAGCTTCTTTTACAATATTTTTAACAACTT 199848 Query 18117 ATTTTGGCAATTTATTAATTATGTGATTATA--ATATAATAAACACGCAAAATCAGTGTG 18174 || ||| | |||||| || | | || | ||||| || ||| |||||| || || Sbjct 199847 CTTCTGGTAGTTTATT--TTCT---AATAAACTATATATTAGACAGTTAAAATCTGTATG 199793 Query 18175 TAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCt 18234 ||| ||||||||||| |||| ||| || ||||| || | || | | | | | Sbjct 199792 TAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTG 199733 Query 18235 tttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGC 18294 |||||| | |||||| || | |||||||| | ||| | |||||| ||||| || || Sbjct 199732 TTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTCAACACATGC 199673 Query 18295 GAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCC 18353 |||| | |||||| ||||| || |||| | ||| | ||||||||| ||||| Sbjct 199672 ATTTGCTACAATTCTTTCTGCAAA--TGAATTTGTA--TCATTTATCCATTTTGCTGCCC 199617 Query 18354 ATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTT 18413 | | ||| | |||||| | || ||||||| ||| |||| || Sbjct 199616 AAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTT 199557 Query 18414 CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTT 18473 |||| ||||||||||||| |||| || | ||| ||| |||| |||||||| ||| Sbjct 199556 CTTTTTCATCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTGAATGTATATTTT 199497 Query 18474 CCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAA 18533 ||| ||||| ||||| ||||| | |||| || | | ||||| ||| || |||| Sbjct 199496 CCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCT-TAAA 199438 Query 18534 ATCTTTCT-ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 | || || ||||||| || |||||||| ||| || ||| |||||||| || ||| Sbjct 199437 AATTTACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACA 199378 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGA 18651 | |||||| ||||| |||||||| || || | ||| ||| | || | || ||| |||| Sbjct 199377 TGTTTAATAAAATGCTTTTCATTCTCATTTA-ATTTTTCAAAATCTTTTAAATCACTTGA 199319 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 || ||| | |||||| | ||||||||| |||| ||| || | ||| || Sbjct 199318 TAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 199271 >seq213 Length=18882 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| ||||| | ||||| || || ||||| || || || || || || || || Sbjct 812 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 753 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| || || || || || Sbjct 752 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 693 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||| || | ||| || || || | |||||| ||||| ||||| |||||||| Sbjct 692 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAA 633 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || || || ||||||||| |||||||||| || Sbjct 632 CATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGG 585 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 1043 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 984 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || ||||| |||||||| ||||| || || || || || Sbjct 983 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 924 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||| || | ||| || || || | || ||| ||||| ||||| |||||||| Sbjct 923 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 864 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 || ||||| | || | || ||||| ||| |||||||||| |||| || Sbjct 863 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTGGAA 811 Score = 107 bits (118), Expect = 3e-18 Identities = 115/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| || ||||| ||||| ||||| || || || ||||||||||| | ||| || ||| Sbjct 1189 AAAATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAG 1130 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTC 156024 || | |||||| |||||| |||| ||||||| | ||||||| || | || | | Sbjct 1129 CAATTGGAAGATGGCAGAACATTATTGGATTATA--ACATCCAAAAGGAATCTACCTTAC 1072 Query 156025 ATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 ||||||| ||| |||||||||| |||| || Sbjct 1071 ATTTAGTCTTACGATTAAGAGGAGGTGGAA 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854489962400